Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 KRT8P47-201ENST00000604727 1398 ntBASIC17.06■□□□□ 0.32
SDC1P18827 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.06■□□□□ 0.32
SDC1P18827 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.06■□□□□ 0.32
SDC1P18827 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
SDC1P18827 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 LIN28AP1-201ENST00000429574 405 ntBASIC17.06■□□□□ 0.32
SDC1P18827 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.06■□□□□ 0.32
SDC1P18827 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.06■□□□□ 0.32
SDC1P18827 COX11P1-201ENST00000489116 835 ntBASIC17.06■□□□□ 0.32
SDC1P18827 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.06■□□□□ 0.32
SDC1P18827 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.06■□□□□ 0.32
SDC1P18827 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.06■□□□□ 0.32
SDC1P18827 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SDC1P18827 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
SDC1P18827 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 ATP5G1P1-201ENST00000448724 379 ntBASIC17.05■□□□□ 0.32
SDC1P18827 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.05■□□□□ 0.32
SDC1P18827 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.05■□□□□ 0.32
SDC1P18827 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 AC116407.2-201ENST00000613639 860 ntBASIC17.05■□□□□ 0.32
SDC1P18827 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 AL023806.1-201ENST00000603994 1649 ntBASIC17.05■□□□□ 0.32
SDC1P18827 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.05■□□□□ 0.32
SDC1P18827 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDC1P18827 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
SDC1P18827 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.05■□□□□ 0.32
SDC1P18827 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.04■□□□□ 0.32
SDC1P18827 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC1P18827 REXO1L11P-201ENST00000620964 1927 ntBASIC17.04■□□□□ 0.32
SDC1P18827 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.04■□□□□ 0.32
SDC1P18827 AC080080.1-201ENST00000625121 2420 ntBASIC17.04■□□□□ 0.32
SDC1P18827 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SDC1P18827 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
SDC1P18827 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.04■□□□□ 0.32
SDC1P18827 HLA-F-220ENST00000434407 884 ntBASIC17.04■□□□□ 0.32
SDC1P18827 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC1P18827 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC1P18827 AC012306.2-201ENST00000609350 630 ntBASIC17.04■□□□□ 0.32
SDC1P18827 AC004263.2-201ENST00000617183 678 ntBASIC17.04■□□□□ 0.32
SDC1P18827 AL031432.5-201ENST00000641059 760 ntBASIC17.04■□□□□ 0.32
SDC1P18827 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SDC1P18827 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SDC1P18827 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC1P18827 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.04■□□□□ 0.32
SDC1P18827 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDC1P18827 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms