Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18.39■□□□□ 0.53
VCANP13611 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.39■□□□□ 0.53
VCANP13611 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VCANP13611 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.39■□□□□ 0.53
VCANP13611 AC097493.3-201ENST00000509725 367 ntBASIC18.39■□□□□ 0.53
VCANP13611 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.39■□□□□ 0.53
VCANP13611 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.39■□□□□ 0.53
VCANP13611 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCANP13611 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCANP13611 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VCANP13611 AC007952.6-201ENST00000573168 2673 ntBASIC18.38■□□□□ 0.53
VCANP13611 AC003957.1-201ENST00000625108 2673 ntBASIC18.38■□□□□ 0.53
VCANP13611 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.38■□□□□ 0.53
VCANP13611 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 GPS2P2-201ENST00000430745 888 ntBASIC18.38■□□□□ 0.53
VCANP13611 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.38■□□□□ 0.53
VCANP13611 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.38■□□□□ 0.53
VCANP13611 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.38■□□□□ 0.53
VCANP13611 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
VCANP13611 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.38■□□□□ 0.53
VCANP13611 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VCANP13611 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 Z98044.1-201ENST00000632503 1764 ntBASIC18.38■□□□□ 0.53
VCANP13611 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VCANP13611 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 HAUS4P1-201ENST00000406739 1145 ntBASIC18.38■□□□□ 0.53
VCANP13611 SPDYE21P-201ENST00000413323 827 ntBASIC18.38■□□□□ 0.53
VCANP13611 AC004890.2-204ENST00000481968 304 ntBASIC18.38■□□□□ 0.53
VCANP13611 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.38■□□□□ 0.53
VCANP13611 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.38■□□□□ 0.53
VCANP13611 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.38■□□□□ 0.53
VCANP13611 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.38■□□□□ 0.53
VCANP13611 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.38■□□□□ 0.53
VCANP13611 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 AC007967.3-201ENST00000434308 558 ntBASIC18.38■□□□□ 0.53
VCANP13611 GIMAP3P-201ENST00000495150 836 ntBASIC18.38■□□□□ 0.53
VCANP13611 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCANP13611 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.38■□□□□ 0.53
VCANP13611 IGHV3OR16-16-201ENST00000563644 343 ntBASIC18.38■□□□□ 0.53
VCANP13611 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.38■□□□□ 0.53
VCANP13611 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.37■□□□□ 0.53
VCANP13611 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.37■□□□□ 0.53
VCANP13611 SDHAP2-201ENST00000455183 2001 ntBASIC18.37■□□□□ 0.53
VCANP13611 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.37■□□□□ 0.53
VCANP13611 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 AC069335.1-201ENST00000489972 472 ntBASIC18.37■□□□□ 0.53
VCANP13611 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.37■□□□□ 0.53
VCANP13611 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
VCANP13611 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.37■□□□□ 0.53
VCANP13611 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.37■□□□□ 0.53
VCANP13611 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.37■□□□□ 0.53
VCANP13611 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VCANP13611 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCANP13611 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.37■□□□□ 0.53
VCANP13611 AC125437.2-201ENST00000625180 2167 ntBASIC18.37■□□□□ 0.53
VCANP13611 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.36■□□□□ 0.53
VCANP13611 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.36■□□□□ 0.53
VCANP13611 AC004790.2-201ENST00000623588 572 ntBASIC18.36■□□□□ 0.53
VCANP13611 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC18.36■□□□□ 0.53
VCANP13611 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.36■□□□□ 0.53
VCANP13611 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC18.36■□□□□ 0.53
VCANP13611 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.36■□□□□ 0.53
VCANP13611 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.36■□□□□ 0.53
VCANP13611 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
VCANP13611 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCANP13611 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.36■□□□□ 0.53
VCANP13611 TREML5P-201ENST00000421694 576 ntBASIC18.36■□□□□ 0.53
VCANP13611 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VCANP13611 AC003101.2-201ENST00000612557 442 ntBASIC18.36■□□□□ 0.53
VCANP13611 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VCANP13611 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VCANP13611 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.35■□□□□ 0.53
VCANP13611 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VCANP13611 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms