Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 AGK-211ENST00000629555 2765 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 AC073210.2-201ENST00000430369 194 ntBASIC13.5□□□□□ -0.25
HLA-DQA1P01909 CROCCP5-201ENST00000436658 830 ntBASIC13.5□□□□□ -0.25
HLA-DQA1P01909 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 AL121832.2-201ENST00000610979 668 ntBASIC13.5□□□□□ -0.25
HLA-DQA1P01909 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DQA1P01909 FRMD6-AS1-201ENST00000617151 2229 ntBASIC13.49□□□□□ -0.25
HLA-DQA1P01909 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 AC068418.2-201ENST00000577309 3703 ntBASIC13.49□□□□□ -0.25
HLA-DQA1P01909 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 AC133552.2-202ENST00000575694 574 ntBASIC13.49□□□□□ -0.25
HLA-DQA1P01909 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 AL050303.2-201ENST00000619798 666 ntBASIC13.49□□□□□ -0.25
HLA-DQA1P01909 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DQA1P01909 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DQA1P01909 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms