Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC148477.8-201ENST00000624298 468 ntBASIC17.46■□□□□ 0.39
TNFP01375 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.46■□□□□ 0.39
TNFP01375 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TNFP01375 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TNFP01375 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TNFP01375 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.46■□□□□ 0.39
TNFP01375 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TNFP01375 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TNFP01375 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
TNFP01375 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
TNFP01375 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
TNFP01375 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.45■□□□□ 0.38
TNFP01375 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TNFP01375 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.45■□□□□ 0.38
TNFP01375 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.45■□□□□ 0.38
TNFP01375 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
TNFP01375 AL138781.2-201ENST00000617896 1843 ntBASIC17.45■□□□□ 0.38
TNFP01375 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TNFP01375 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.45■□□□□ 0.38
TNFP01375 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TNFP01375 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
TNFP01375 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.45■□□□□ 0.38
TNFP01375 AC018712.1-201ENST00000455767 687 ntBASIC17.45■□□□□ 0.38
TNFP01375 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.45■□□□□ 0.38
TNFP01375 RNA5SP419-201ENST00000515908 135 ntBASIC17.45■□□□□ 0.38
TNFP01375 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.45■□□□□ 0.38
TNFP01375 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
TNFP01375 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.45■□□□□ 0.38
TNFP01375 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TNFP01375 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.45■□□□□ 0.38
TNFP01375 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.45■□□□□ 0.38
TNFP01375 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TNFP01375 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TNFP01375 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.45■□□□□ 0.38
TNFP01375 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFP01375 AC010460.3-201ENST00000511359 1579 ntBASIC17.45■□□□□ 0.38
TNFP01375 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
TNFP01375 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.44■□□□□ 0.38
TNFP01375 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TNFP01375 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.44■□□□□ 0.38
TNFP01375 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TNFP01375 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.44■□□□□ 0.38
TNFP01375 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.44■□□□□ 0.38
TNFP01375 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.44■□□□□ 0.38
TNFP01375 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.44■□□□□ 0.38
TNFP01375 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 AC103564.2-201ENST00000432853 1299 ntBASIC17.44■□□□□ 0.38
TNFP01375 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TNFP01375 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.44■□□□□ 0.38
TNFP01375 AC021087.4-201ENST00000563761 564 ntBASIC17.44■□□□□ 0.38
TNFP01375 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.44■□□□□ 0.38
TNFP01375 AC116407.2-201ENST00000613639 860 ntBASIC17.44■□□□□ 0.38
TNFP01375 AP000867.4-201ENST00000641616 219 ntBASIC17.44■□□□□ 0.38
TNFP01375 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 AC135776.1-201ENST00000319817 2481 ntBASIC17.44■□□□□ 0.38
TNFP01375 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TNFP01375 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.43■□□□□ 0.38
TNFP01375 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.43■□□□□ 0.38
TNFP01375 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.43■□□□□ 0.38
TNFP01375 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.43■□□□□ 0.38
TNFP01375 COX5BP2-201ENST00000392354 334 ntBASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms