Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PROM1O43490 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.03■□□□□ 0.32
PROM1O43490 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
PROM1O43490 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PROM1O43490 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
PROM1O43490 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.02■□□□□ 0.32
PROM1O43490 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.02■□□□□ 0.32
PROM1O43490 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PROM1O43490 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.02■□□□□ 0.32
PROM1O43490 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
PROM1O43490 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.02■□□□□ 0.32
PROM1O43490 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.02■□□□□ 0.32
PROM1O43490 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.02■□□□□ 0.32
PROM1O43490 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.02■□□□□ 0.32
PROM1O43490 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.02■□□□□ 0.32
PROM1O43490 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 AL390719.2-201ENST00000606993 987 ntBASIC17.02■□□□□ 0.32
PROM1O43490 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
PROM1O43490 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PROM1O43490 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PROM1O43490 Z83836.1-201ENST00000624605 1642 ntBASIC17.02■□□□□ 0.31
PROM1O43490 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PROM1O43490 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PROM1O43490 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.02■□□□□ 0.31
PROM1O43490 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PROM1O43490 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
PROM1O43490 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
PROM1O43490 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PROM1O43490 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.01■□□□□ 0.31
PROM1O43490 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PROM1O43490 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PROM1O43490 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.01■□□□□ 0.31
PROM1O43490 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.01■□□□□ 0.31
PROM1O43490 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PROM1O43490 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PROM1O43490 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PROM1O43490 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PROM1O43490 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.01■□□□□ 0.31
PROM1O43490 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.01■□□□□ 0.31
PROM1O43490 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PROM1O43490 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.01■□□□□ 0.31
PROM1O43490 TSPY12P-201ENST00000421279 868 ntBASIC17.01■□□□□ 0.31
PROM1O43490 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.01■□□□□ 0.31
PROM1O43490 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PROM1O43490 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.01■□□□□ 0.31
PROM1O43490 FAM86EP-206ENST00000510506 987 ntBASIC17.01■□□□□ 0.31
PROM1O43490 AC009154.2-201ENST00000621177 724 ntBASIC17.01■□□□□ 0.31
PROM1O43490 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
PROM1O43490 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.01■□□□□ 0.31
PROM1O43490 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
PROM1O43490 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PROM1O43490 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.01■□□□□ 0.31
PROM1O43490 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PROM1O43490 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
PROM1O43490 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PROM1O43490 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PROM1O43490 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.01■□□□□ 0.31
PROM1O43490 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PROM1O43490 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
PROM1O43490 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PROM1O43490 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PROM1O43490 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PROM1O43490 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PROM1O43490 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17■□□□□ 0.31
PROM1O43490 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PROM1O43490 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17■□□□□ 0.31
PROM1O43490 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17■□□□□ 0.31
PROM1O43490 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17■□□□□ 0.31
PROM1O43490 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17■□□□□ 0.31
PROM1O43490 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms