Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.17■□□□□ 0.34
CDX4O14627 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.17■□□□□ 0.34
CDX4O14627 AC109322.1-201ENST00000524499 1264 ntBASIC17.17■□□□□ 0.34
CDX4O14627 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CDX4O14627 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.17■□□□□ 0.34
CDX4O14627 AC025678.2-201ENST00000562061 970 ntBASIC17.17■□□□□ 0.34
CDX4O14627 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.17■□□□□ 0.34
CDX4O14627 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.17■□□□□ 0.34
CDX4O14627 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
CDX4O14627 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
CDX4O14627 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CDX4O14627 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CDX4O14627 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX4O14627 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX4O14627 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX4O14627 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX4O14627 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDX4O14627 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX4O14627 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX4O14627 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
CDX4O14627 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX4O14627 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CDX4O14627 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX4O14627 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.16■□□□□ 0.34
CDX4O14627 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.16■□□□□ 0.34
CDX4O14627 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX4O14627 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CDX4O14627 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX4O14627 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX4O14627 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.16■□□□□ 0.34
CDX4O14627 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.16■□□□□ 0.34
CDX4O14627 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX4O14627 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX4O14627 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
CDX4O14627 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
CDX4O14627 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX4O14627 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.15■□□□□ 0.34
CDX4O14627 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.15■□□□□ 0.34
CDX4O14627 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.15■□□□□ 0.34
CDX4O14627 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.15■□□□□ 0.34
CDX4O14627 SIGLEC30P-201ENST00000455569 941 ntBASIC17.15■□□□□ 0.34
CDX4O14627 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.15■□□□□ 0.34
CDX4O14627 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.15■□□□□ 0.34
CDX4O14627 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.15■□□□□ 0.34
CDX4O14627 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CDX4O14627 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CDX4O14627 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CDX4O14627 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX4O14627 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
CDX4O14627 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX4O14627 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX4O14627 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CDX4O14627 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CDX4O14627 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.14■□□□□ 0.33
CDX4O14627 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CDX4O14627 PTCHD3P3-201ENST00000403073 906 ntBASIC17.14■□□□□ 0.33
CDX4O14627 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX4O14627 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.14■□□□□ 0.33
CDX4O14627 AC190387.1-201ENST00000551683 408 ntBASIC17.14■□□□□ 0.33
CDX4O14627 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.14■□□□□ 0.33
CDX4O14627 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.14■□□□□ 0.33
CDX4O14627 AC023141.13-201ENST00000604991 943 ntBASIC17.14■□□□□ 0.33
CDX4O14627 AC007064.4-201ENST00000637740 555 ntBASIC17.14■□□□□ 0.33
CDX4O14627 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.14■□□□□ 0.33
CDX4O14627 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX4O14627 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX4O14627 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.14■□□□□ 0.33
CDX4O14627 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX4O14627 GMCL1P1-201ENST00000463439 1581 ntBASIC17.14■□□□□ 0.33
CDX4O14627 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms