Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX1O00570 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX1O00570 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.93■□□□□ 0.62
SOX1O00570 PTCHD3P3-201ENST00000403073 906 ntBASIC18.93■□□□□ 0.62
SOX1O00570 AC004945.1-201ENST00000416738 983 ntBASIC18.93■□□□□ 0.62
SOX1O00570 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX1O00570 KRT18P32-201ENST00000424695 1287 ntBASIC18.93■□□□□ 0.62
SOX1O00570 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.93■□□□□ 0.62
SOX1O00570 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.93■□□□□ 0.62
SOX1O00570 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.93■□□□□ 0.62
SOX1O00570 PARP8-206ENST00000503665 572 ntTSL 4 BASIC18.93■□□□□ 0.62
SOX1O00570 AC112191.1-201ENST00000523689 701 ntBASIC18.93■□□□□ 0.62
SOX1O00570 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX1O00570 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.93■□□□□ 0.62
SOX1O00570 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX1O00570 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX1O00570 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
SOX1O00570 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SOX1O00570 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX1O00570 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SOX1O00570 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 AC010460.3-201ENST00000511359 1579 ntBASIC18.93■□□□□ 0.62
SOX1O00570 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.93■□□□□ 0.62
SOX1O00570 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX1O00570 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.93■□□□□ 0.62
SOX1O00570 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX1O00570 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX1O00570 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX1O00570 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX1O00570 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SOX1O00570 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX1O00570 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX1O00570 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX1O00570 MIR1909-201ENST00000411312 80 ntBASIC18.92■□□□□ 0.62
SOX1O00570 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SOX1O00570 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX1O00570 AL592309.1-201ENST00000443127 649 ntBASIC18.92■□□□□ 0.62
SOX1O00570 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.92■□□□□ 0.62
SOX1O00570 AC122714.2-201ENST00000502787 707 ntBASIC18.92■□□□□ 0.62
SOX1O00570 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.92■□□□□ 0.62
SOX1O00570 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX1O00570 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX1O00570 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX1O00570 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.92■□□□□ 0.62
SOX1O00570 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX1O00570 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.92■□□□□ 0.62
SOX1O00570 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SOX1O00570 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX1O00570 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 MTMR9LP-203ENST00000426597 1545 ntBASIC18.91■□□□□ 0.62
SOX1O00570 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 AL355306.1-201ENST00000415580 579 ntBASIC18.91■□□□□ 0.62
SOX1O00570 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX1O00570 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX1O00570 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.91■□□□□ 0.62
SOX1O00570 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
SOX1O00570 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.91■□□□□ 0.62
SOX1O00570 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.91■□□□□ 0.62
SOX1O00570 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX1O00570 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.91■□□□□ 0.62
SOX1O00570 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX1O00570 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX1O00570 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX1O00570 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX1O00570 AC008677.1-201ENST00000519230 1561 ntBASIC18.9■□□□□ 0.62
SOX1O00570 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX1O00570 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX1O00570 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX1O00570 MRPS18AP1-201ENST00000414458 589 ntBASIC18.9■□□□□ 0.62
SOX1O00570 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX1O00570 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX1O00570 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX1O00570 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX1O00570 CXCL1P1-201ENST00000502804 216 ntBASIC18.9■□□□□ 0.62
SOX1O00570 AC092658.1-201ENST00000505836 891 ntBASIC18.9■□□□□ 0.62
SOX1O00570 AC097493.3-201ENST00000509725 367 ntBASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms