Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.69■□□□□ 0.26
CACNA1AO00555 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.69■□□□□ 0.26
CACNA1AO00555 AC132938.5-201ENST00000624980 1813 ntBASIC16.69■□□□□ 0.26
CACNA1AO00555 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CACNA1AO00555 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CACNA1AO00555 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CACNA1AO00555 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC16.69■□□□□ 0.26
CACNA1AO00555 MYCLP1-201ENST00000372451 1075 ntBASIC16.69■□□□□ 0.26
CACNA1AO00555 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CACNA1AO00555 AL353779.1-201ENST00000434793 351 ntBASIC16.69■□□□□ 0.26
CACNA1AO00555 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.69■□□□□ 0.26
CACNA1AO00555 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.69■□□□□ 0.26
CACNA1AO00555 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CACNA1AO00555 GNAS-203ENST00000306120 1878 ntBASIC16.69■□□□□ 0.26
CACNA1AO00555 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CACNA1AO00555 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.69■□□□□ 0.26
CACNA1AO00555 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.69■□□□□ 0.26
CACNA1AO00555 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.69■□□□□ 0.26
CACNA1AO00555 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.69■□□□□ 0.26
CACNA1AO00555 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CACNA1AO00555 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.68■□□□□ 0.26
CACNA1AO00555 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.68■□□□□ 0.26
CACNA1AO00555 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.68■□□□□ 0.26
CACNA1AO00555 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.68■□□□□ 0.26
CACNA1AO00555 AC104794.3-201ENST00000566840 1248 ntBASIC16.68■□□□□ 0.26
CACNA1AO00555 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.68■□□□□ 0.26
CACNA1AO00555 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.68■□□□□ 0.26
CACNA1AO00555 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CACNA1AO00555 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.68■□□□□ 0.26
CACNA1AO00555 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CACNA1AO00555 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.68■□□□□ 0.26
CACNA1AO00555 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.68■□□□□ 0.26
CACNA1AO00555 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 AP006294.1-201ENST00000415407 339 ntBASIC16.68■□□□□ 0.26
CACNA1AO00555 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.68■□□□□ 0.26
CACNA1AO00555 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 CXCL1P1-201ENST00000502804 216 ntBASIC16.68■□□□□ 0.26
CACNA1AO00555 API5-211ENST00000534695 560 ntTSL 5 BASIC16.68■□□□□ 0.26
CACNA1AO00555 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.68■□□□□ 0.26
CACNA1AO00555 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.68■□□□□ 0.26
CACNA1AO00555 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CACNA1AO00555 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.68■□□□□ 0.26
CACNA1AO00555 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CACNA1AO00555 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 AL671277.1-201ENST00000429656 993 ntBASIC16.67■□□□□ 0.26
CACNA1AO00555 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CACNA1AO00555 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.67■□□□□ 0.26
CACNA1AO00555 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC16.67■□□□□ 0.26
CACNA1AO00555 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.67■□□□□ 0.26
CACNA1AO00555 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.67■□□□□ 0.26
CACNA1AO00555 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CACNA1AO00555 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC16.67■□□□□ 0.26
CACNA1AO00555 HNRNPUP1-201ENST00000554987 333 ntBASIC16.67■□□□□ 0.26
CACNA1AO00555 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.67■□□□□ 0.26
CACNA1AO00555 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.67■□□□□ 0.26
CACNA1AO00555 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CACNA1AO00555 LSR-203ENST00000360798 1963 ntTSL 2 BASIC16.67■□□□□ 0.26
CACNA1AO00555 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.67■□□□□ 0.26
CACNA1AO00555 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.67■□□□□ 0.26
CACNA1AO00555 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CACNA1AO00555 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.66■□□□□ 0.26
CACNA1AO00555 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 SPDYE7P-202ENST00000420373 878 ntBASIC16.66■□□□□ 0.26
CACNA1AO00555 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.66■□□□□ 0.26
CACNA1AO00555 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.66■□□□□ 0.26
CACNA1AO00555 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CACNA1AO00555 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.66■□□□□ 0.26
CACNA1AO00555 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC16.66■□□□□ 0.26
CACNA1AO00555 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.66■□□□□ 0.26
CACNA1AO00555 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CACNA1AO00555 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms