Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 NSUN5P1-202ENST00000421140 1535 ntBASIC18.31■□□□□ 0.52
CBX4O00257 NSUN5P2-203ENST00000457352 1529 ntBASIC18.31■□□□□ 0.52
CBX4O00257 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.31■□□□□ 0.52
CBX4O00257 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.31■□□□□ 0.52
CBX4O00257 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.31■□□□□ 0.52
CBX4O00257 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CBX4O00257 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.31■□□□□ 0.52
CBX4O00257 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CBX4O00257 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.31■□□□□ 0.52
CBX4O00257 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.31■□□□□ 0.52
CBX4O00257 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.3■□□□□ 0.52
CBX4O00257 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 AC135050.7-201ENST00000624508 2218 ntBASIC18.3■□□□□ 0.52
CBX4O00257 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
CBX4O00257 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
CBX4O00257 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.3■□□□□ 0.52
CBX4O00257 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CBX4O00257 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CBX4O00257 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CBX4O00257 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.3■□□□□ 0.52
CBX4O00257 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CBX4O00257 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CBX4O00257 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 IGHV3-47-201ENST00000425060 335 ntBASIC18.3■□□□□ 0.52
CBX4O00257 FOSL1P1-201ENST00000511041 816 ntBASIC18.3■□□□□ 0.52
CBX4O00257 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.3■□□□□ 0.52
CBX4O00257 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.3■□□□□ 0.52
CBX4O00257 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 AC138894.3-201ENST00000603787 634 ntBASIC18.3■□□□□ 0.52
CBX4O00257 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.3■□□□□ 0.52
CBX4O00257 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CBX4O00257 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CBX4O00257 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.29■□□□□ 0.52
CBX4O00257 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CBX4O00257 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.29■□□□□ 0.52
CBX4O00257 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.29■□□□□ 0.52
CBX4O00257 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.29■□□□□ 0.52
CBX4O00257 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.29■□□□□ 0.52
CBX4O00257 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 AC004870.1-201ENST00000315132 882 ntBASIC18.29■□□□□ 0.52
CBX4O00257 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 NUS1P1-201ENST00000446295 882 ntBASIC18.29■□□□□ 0.52
CBX4O00257 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.29■□□□□ 0.52
CBX4O00257 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.29■□□□□ 0.52
CBX4O00257 AC005336.2-201ENST00000593183 939 ntBASIC18.29■□□□□ 0.52
CBX4O00257 AL732292.2-201ENST00000609649 430 ntBASIC18.29■□□□□ 0.52
CBX4O00257 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.29■□□□□ 0.52
CBX4O00257 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.29■□□□□ 0.52
CBX4O00257 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CBX4O00257 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CBX4O00257 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.29■□□□□ 0.52
CBX4O00257 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CBX4O00257 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.29■□□□□ 0.52
CBX4O00257 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.29■□□□□ 0.52
CBX4O00257 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CBX4O00257 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.28■□□□□ 0.52
CBX4O00257 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CBX4O00257 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.28■□□□□ 0.52
CBX4O00257 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CBX4O00257 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms