Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 MMP23A-201ENST00000234610 1017 ntBASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 SLC25A6P5-201ENST00000435663 894 ntBASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 NAPSB-206ENST00000562112 1266 ntBASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM56Q9BRZ2 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 CROCCP1-201ENST00000426910 5675 ntBASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TRIM56Q9BRZ2 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 AC097493.4-201ENST00000641197 219 ntBASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM56Q9BRZ2 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms