Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP28Q96RU2 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.52■□□□□ 0.87
USP28Q96RU2 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.52■□□□□ 0.87
USP28Q96RU2 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.87
USP28Q96RU2 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.52■□□□□ 0.87
USP28Q96RU2 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.51■□□□□ 0.87
USP28Q96RU2 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.51■□□□□ 0.87
USP28Q96RU2 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.51■□□□□ 0.87
USP28Q96RU2 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
USP28Q96RU2 REXO1L11P-201ENST00000620964 1927 ntBASIC20.51■□□□□ 0.87
USP28Q96RU2 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.51■□□□□ 0.87
USP28Q96RU2 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.51■□□□□ 0.87
USP28Q96RU2 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 AC034232.1-201ENST00000506026 1064 ntBASIC20.51■□□□□ 0.87
USP28Q96RU2 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
USP28Q96RU2 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 AL136038.4-201ENST00000603606 1261 ntBASIC20.51■□□□□ 0.87
USP28Q96RU2 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.51■□□□□ 0.87
USP28Q96RU2 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.51■□□□□ 0.87
USP28Q96RU2 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.51■□□□□ 0.87
USP28Q96RU2 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP28Q96RU2 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.51■□□□□ 0.87
USP28Q96RU2 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.5■□□□□ 0.87
USP28Q96RU2 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
USP28Q96RU2 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
USP28Q96RU2 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.5■□□□□ 0.87
USP28Q96RU2 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.5■□□□□ 0.87
USP28Q96RU2 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.5■□□□□ 0.87
USP28Q96RU2 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.5■□□□□ 0.87
USP28Q96RU2 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.5■□□□□ 0.87
USP28Q96RU2 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.5■□□□□ 0.87
USP28Q96RU2 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.5■□□□□ 0.87
USP28Q96RU2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP28Q96RU2 KRT89P-201ENST00000620027 1478 ntBASIC20.5■□□□□ 0.87
USP28Q96RU2 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.49■□□□□ 0.87
USP28Q96RU2 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
USP28Q96RU2 PCDHA12-202ENST00000613593 2588 ntBASIC20.49■□□□□ 0.87
USP28Q96RU2 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
USP28Q96RU2 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
USP28Q96RU2 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.49■□□□□ 0.87
USP28Q96RU2 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.49■□□□□ 0.87
USP28Q96RU2 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.49■□□□□ 0.87
USP28Q96RU2 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.49■□□□□ 0.87
USP28Q96RU2 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.49■□□□□ 0.87
USP28Q96RU2 AC012306.2-201ENST00000609350 630 ntBASIC20.49■□□□□ 0.87
USP28Q96RU2 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
USP28Q96RU2 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.49■□□□□ 0.87
USP28Q96RU2 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
USP28Q96RU2 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.49■□□□□ 0.87
USP28Q96RU2 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP28Q96RU2 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP28Q96RU2 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP28Q96RU2 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP28Q96RU2 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP28Q96RU2 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP28Q96RU2 AL138688.1-201ENST00000624851 1594 ntBASIC20.48■□□□□ 0.87
USP28Q96RU2 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP28Q96RU2 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP28Q96RU2 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
USP28Q96RU2 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP28Q96RU2 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
USP28Q96RU2 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.48■□□□□ 0.87
USP28Q96RU2 KRT18P65-201ENST00000439811 1286 ntBASIC20.48■□□□□ 0.87
USP28Q96RU2 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.48■□□□□ 0.87
USP28Q96RU2 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.48■□□□□ 0.87
USP28Q96RU2 AC140113.3-201ENST00000605663 199 ntBASIC20.48■□□□□ 0.87
USP28Q96RU2 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms