Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
LINC00477Q96M19 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00477Q96M19 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 AL390955.1-201ENST00000428694 934 ntBASIC13.46□□□□□ -0.25
LINC00477Q96M19 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00477Q96M19 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 NEK4P2-201ENST00000580004 1012 ntBASIC13.46□□□□□ -0.25
LINC00477Q96M19 GPX4-207ENST00000589115 812 ntTSL 2 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 SNX21-213ENST00000614929 587 ntTSL 5 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
LINC00477Q96M19 NFIC-211ENST00000641145 8399 ntBASIC13.46□□□□□ -0.25
LINC00477Q96M19 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
LINC00477Q96M19 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
LINC00477Q96M19 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
LINC00477Q96M19 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC13.46□□□□□ -0.26
LINC00477Q96M19 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
LINC00477Q96M19 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
LINC00477Q96M19 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
LINC00477Q96M19 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC13.46□□□□□ -0.26
LINC00477Q96M19 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
LINC00477Q96M19 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
LINC00477Q96M19 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
LINC00477Q96M19 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 AP000523.1-201ENST00000398242 1049 ntBASIC13.45□□□□□ -0.26
LINC00477Q96M19 SEC1P-202ENST00000473944 940 ntBASIC13.45□□□□□ -0.26
LINC00477Q96M19 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC13.45□□□□□ -0.26
LINC00477Q96M19 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00477Q96M19 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms