Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SNRNP40Q96DI7 AC005082.1-201ENST00000413042 2259 ntBASIC16.08■□□□□ 0.17
SNRNP40Q96DI7 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
SNRNP40Q96DI7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SNRNP40Q96DI7 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
SNRNP40Q96DI7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
SNRNP40Q96DI7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SNRNP40Q96DI7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 KRT18P2-201ENST00000447938 1258 ntBASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 PRYP5-201ENST00000451909 266 ntBASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 AC136632.2-201ENST00000512891 861 ntBASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 AC005829.1-201ENST00000570002 483 ntBASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 AC073592.4-201ENST00000623827 446 ntBASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 AC116562.4-201ENST00000641316 2276 ntBASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.08■□□□□ 0.16
SNRNP40Q96DI7 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 MCCD1P2-201ENST00000423228 335 ntBASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SNRNP40Q96DI7 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 METTL21AP1-201ENST00000438852 635 ntBASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 SNHG9-202ENST00000564014 471 ntBASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 AD001527.2-201ENST00000622994 785 ntBASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SNRNP40Q96DI7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms