Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC23.54■■□□□ 1.36
USHBP1Q8N6Y0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 RNA5SP416-201ENST00000516838 111 ntBASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USHBP1Q8N6Y0 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 KRT18P2-201ENST00000447938 1258 ntBASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 AC040169.1-201ENST00000565382 521 ntBASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USHBP1Q8N6Y0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 AC100803.2-201ENST00000562459 1963 ntBASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 AL096828.2-201ENST00000567259 1965 ntBASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 AC108751.1-201ENST00000490852 363 ntBASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 AC064836.3-201ENST00000607928 673 ntBASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 AC073592.3-201ENST00000625118 1834 ntBASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USHBP1Q8N6Y0 SIGLEC16-201ENST00000599858 1437 ntBASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 ELK2BP-201ENST00000415014 1224 ntBASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms