Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 AL645939.2-201ENST00000427340 991 ntBASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 HTR5BP-201ENST00000430851 1154 ntBASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.29■□□□□ 0.52
SLC44A3Q8N4M1 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 CNN2P11-201ENST00000429351 262 ntBASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 AC004706.3-202ENST00000621574 984 ntBASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 AC132938.6-201ENST00000623828 1655 ntBASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 AC005082.1-201ENST00000413042 2259 ntBASIC18.28■□□□□ 0.52
SLC44A3Q8N4M1 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 AC103564.2-201ENST00000432853 1299 ntBASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 VN2R19P-201ENST00000442399 1052 ntBASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 AP002472.1-201ENST00000577490 586 ntBASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.27■□□□□ 0.52
SLC44A3Q8N4M1 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms