Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 AL137013.1-201ENST00000432946 1228 ntBASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 AC005363.2-201ENST00000618631 242 ntBASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC40Q4G0X9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.75
CCDC40Q4G0X9 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC40Q4G0X9 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
CCDC40Q4G0X9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.77■□□□□ 0.75
CCDC40Q4G0X9 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC40Q4G0X9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
CCDC40Q4G0X9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC40Q4G0X9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 LINC00602-201ENST00000629776 2065 ntBASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 AC006116.8-202ENST00000587620 1550 ntBASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 AC113347.1-201ENST00000413321 391 ntBASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 RASA4DP-201ENST00000460726 1199 ntBASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 DUTP2-201ENST00000519164 463 ntBASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 AL441883.1-201ENST00000566170 1045 ntBASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CCDC40Q4G0X9 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 AL031432.5-201ENST00000641059 760 ntBASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 LINC00167-201ENST00000530583 1419 ntBASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC40Q4G0X9 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 TERF1P1-201ENST00000311003 1181 ntBASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms