Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.8■■□□□ 1.08
CCDC88AQ3V6T2 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 MAL2-202ENST00000531508 892 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 AC244107.1-201ENST00000442033 332 ntBASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 PDPK2P-202ENST00000562415 1191 ntBASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 AC005593.1-201ENST00000624894 515 ntBASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 AL022326.1-202ENST00000641533 845 ntBASIC21.79■■□□□ 1.08
CCDC88AQ3V6T2 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 AC109322.1-201ENST00000524499 1264 ntBASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CCDC88AQ3V6T2 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 LSM12-202ENST00000585388 942 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 KRT8P47-201ENST00000604727 1398 ntBASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 AC073592.3-201ENST00000625118 1834 ntBASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 RNF34-208ENST00000555076 593 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 AD001527.2-201ENST00000622994 785 ntBASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 AC010507.1-201ENST00000633895 436 ntBASIC21.77■■□□□ 1.08
CCDC88AQ3V6T2 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC88AQ3V6T2 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.77■■□□□ 1.07
CCDC88AQ3V6T2 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.77■■□□□ 1.07
CCDC88AQ3V6T2 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC88AQ3V6T2 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC88AQ3V6T2 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC88AQ3V6T2 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms