Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 DUTP2-201ENST00000519164 463 ntBASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 AC011498.5-201ENST00000592027 486 ntBASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 AC134043.2-201ENST00000624206 2238 ntBASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 KRT18P55-202ENST00000578578 1546 ntBASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PTCHD3Q3KNS1 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 KRT18P48-201ENST00000434763 852 ntBASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 AC092119.3-201ENST00000612618 583 ntBASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
PTCHD3Q3KNS1 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms