Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC29.81■■■□□ 2.36
CUX1P39880 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC29.81■■■□□ 2.36
CUX1P39880 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC29.81■■■□□ 2.36
CUX1P39880 STK25P1-201ENST00000585406 838 ntBASIC29.81■■■□□ 2.36
CUX1P39880 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC29.81■■■□□ 2.36
CUX1P39880 METTL23-205ENST00000588302 925 ntTSL 5 BASIC29.81■■■□□ 2.36
CUX1P39880 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC29.81■■■□□ 2.36
CUX1P39880 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC29.81■■■□□ 2.36
CUX1P39880 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 CBR1-202ENST00000399191 838 ntTSL 3 BASIC29.81■■■□□ 2.36
CUX1P39880 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC29.81■■■□□ 2.36
CUX1P39880 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC29.81■■■□□ 2.36
CUX1P39880 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC29.81■■■□□ 2.36
CUX1P39880 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC29.81■■■□□ 2.36
CUX1P39880 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC29.81■■■□□ 2.36
CUX1P39880 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC29.81■■■□□ 2.36
CUX1P39880 AL353135.1-201ENST00000606729 504 ntBASIC29.81■■■□□ 2.36
CUX1P39880 AQP6-205ENST00000618286 829 ntTSL 5 BASIC29.81■■■□□ 2.36
CUX1P39880 AL513210.1-201ENST00000629608 234 ntBASIC29.81■■■□□ 2.36
CUX1P39880 AC092902.6-201ENST00000641783 218 ntBASIC29.81■■■□□ 2.36
CUX1P39880 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC29.8■■■□□ 2.36
CUX1P39880 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC29.8■■■□□ 2.36
CUX1P39880 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC29.8■■■□□ 2.36
CUX1P39880 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 AC018445.3-201ENST00000624177 1945 ntBASIC29.8■■■□□ 2.36
CUX1P39880 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
CUX1P39880 FAM58CP-201ENST00000435741 640 ntBASIC29.8■■■□□ 2.36
CUX1P39880 AC096734.2-201ENST00000562054 433 ntBASIC29.8■■■□□ 2.36
CUX1P39880 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC29.8■■■□□ 2.36
CUX1P39880 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CUX1P39880 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CUX1P39880 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX1P39880 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX1P39880 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX1P39880 MIR770-201ENST00000390219 98 ntBASIC29.79■■■□□ 2.36
CUX1P39880 AP002414.1-201ENST00000391405 1147 ntBASIC29.79■■■□□ 2.36
CUX1P39880 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CUX1P39880 CD63-210ENST00000550776 870 ntTSL 5 BASIC29.79■■■□□ 2.36
CUX1P39880 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX1P39880 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC29.79■■■□□ 2.36
CUX1P39880 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX1P39880 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC29.79■■■□□ 2.36
CUX1P39880 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX1P39880 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC29.79■■■□□ 2.36
CUX1P39880 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC29.78■■■□□ 2.36
CUX1P39880 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC29.78■■■□□ 2.36
CUX1P39880 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC29.78■■■□□ 2.36
CUX1P39880 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC29.78■■■□□ 2.36
CUX1P39880 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC29.78■■■□□ 2.36
CUX1P39880 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC29.78■■■□□ 2.36
CUX1P39880 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC29.78■■■□□ 2.36
CUX1P39880 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC29.78■■■□□ 2.36
CUX1P39880 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC29.78■■■□□ 2.36
CUX1P39880 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX1P39880 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC29.78■■■□□ 2.36
CUX1P39880 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC29.78■■■□□ 2.36
CUX1P39880 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX1P39880 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC29.78■■■□□ 2.36
CUX1P39880 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
CUX1P39880 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX1P39880 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
CUX1P39880 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC29.78■■■□□ 2.36
CUX1P39880 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC29.78■■■□□ 2.36
CUX1P39880 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC29.77■■■□□ 2.36
CUX1P39880 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX1P39880 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC29.77■■■□□ 2.36
CUX1P39880 TMED1-207ENST00000591695 809 ntTSL 5 BASIC29.77■■■□□ 2.36
CUX1P39880 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC29.77■■■□□ 2.36
CUX1P39880 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC29.77■■■□□ 2.36
CUX1P39880 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX1P39880 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX1P39880 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC29.77■■■□□ 2.36
CUX1P39880 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC29.77■■■□□ 2.36
CUX1P39880 BCAR1-209ENST00000546196 1340 ntBASIC29.77■■■□□ 2.36
CUX1P39880 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX1P39880 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC29.76■■■□□ 2.36
CUX1P39880 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
CUX1P39880 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC29.76■■■□□ 2.36
CUX1P39880 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC29.76■■■□□ 2.36
CUX1P39880 BCRP1-201ENST00000444246 691 ntBASIC29.76■■■□□ 2.36
CUX1P39880 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC29.76■■■□□ 2.36
CUX1P39880 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.36
CUX1P39880 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC29.76■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms