Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.67■□□□□ 0.9
LIG1P18858 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.66■□□□□ 0.9
LIG1P18858 AC022211.2-201ENST00000585075 2527 ntBASIC20.66■□□□□ 0.9
LIG1P18858 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 AC117947.1-201ENST00000427448 529 ntBASIC20.66■□□□□ 0.9
LIG1P18858 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
LIG1P18858 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.66■□□□□ 0.9
LIG1P18858 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LIG1P18858 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.66■□□□□ 0.9
LIG1P18858 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.66■□□□□ 0.9
LIG1P18858 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.66■□□□□ 0.9
LIG1P18858 AC140113.3-201ENST00000605663 199 ntBASIC20.66■□□□□ 0.9
LIG1P18858 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.66■□□□□ 0.9
LIG1P18858 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.66■□□□□ 0.9
LIG1P18858 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
LIG1P18858 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.66■□□□□ 0.9
LIG1P18858 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.66■□□□□ 0.9
LIG1P18858 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG1P18858 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
LIG1P18858 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.65■□□□□ 0.9
LIG1P18858 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
LIG1P18858 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 AL355312.1-201ENST00000407115 2176 ntBASIC20.65■□□□□ 0.9
LIG1P18858 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.65■□□□□ 0.9
LIG1P18858 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.65■□□□□ 0.9
LIG1P18858 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
LIG1P18858 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LIG1P18858 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.65■□□□□ 0.9
LIG1P18858 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 DUX4L26-201ENST00000489078 1255 ntBASIC20.65■□□□□ 0.9
LIG1P18858 COX11P1-201ENST00000489116 835 ntBASIC20.65■□□□□ 0.9
LIG1P18858 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.65■□□□□ 0.9
LIG1P18858 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.65■□□□□ 0.9
LIG1P18858 AL512604.3-201ENST00000569583 964 ntBASIC20.65■□□□□ 0.9
LIG1P18858 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.65■□□□□ 0.9
LIG1P18858 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.65■□□□□ 0.9
LIG1P18858 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
LIG1P18858 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.65■□□□□ 0.9
LIG1P18858 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG1P18858 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIG1P18858 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIG1P18858 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIG1P18858 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIG1P18858 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.64■□□□□ 0.9
LIG1P18858 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.64■□□□□ 0.89
LIG1P18858 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.64■□□□□ 0.89
LIG1P18858 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.64■□□□□ 0.89
LIG1P18858 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIG1P18858 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIG1P18858 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.64■□□□□ 0.89
LIG1P18858 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
LIG1P18858 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.64■□□□□ 0.89
LIG1P18858 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
LIG1P18858 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.64■□□□□ 0.89
LIG1P18858 AC100803.2-201ENST00000562459 1963 ntBASIC20.64■□□□□ 0.89
LIG1P18858 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIG1P18858 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.64■□□□□ 0.89
LIG1P18858 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.64■□□□□ 0.89
LIG1P18858 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIG1P18858 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.63■□□□□ 0.89
LIG1P18858 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG1P18858 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG1P18858 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG1P18858 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.63■□□□□ 0.89
LIG1P18858 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LIG1P18858 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
LIG1P18858 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.63■□□□□ 0.89
LIG1P18858 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIG1P18858 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms