Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.21■□□□□ 0.51
HOXC11O43248 AD001527.2-201ENST00000622994 785 ntBASIC18.21■□□□□ 0.51
HOXC11O43248 AC073592.4-201ENST00000623827 446 ntBASIC18.21■□□□□ 0.51
HOXC11O43248 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC11O43248 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.21■□□□□ 0.51
HOXC11O43248 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
HOXC11O43248 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.21■□□□□ 0.51
HOXC11O43248 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.21■□□□□ 0.51
HOXC11O43248 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC11O43248 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.21■□□□□ 0.51
HOXC11O43248 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
HOXC11O43248 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.21■□□□□ 0.5
HOXC11O43248 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
HOXC11O43248 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.2■□□□□ 0.5
HOXC11O43248 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.2■□□□□ 0.5
HOXC11O43248 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 HLA-J-201ENST00000462773 1622 ntBASIC18.2■□□□□ 0.5
HOXC11O43248 AC079776.2-201ENST00000641154 1609 ntBASIC18.2■□□□□ 0.5
HOXC11O43248 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.2■□□□□ 0.5
HOXC11O43248 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HOXC11O43248 COX5BP2-201ENST00000392354 334 ntBASIC18.2■□□□□ 0.5
HOXC11O43248 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HOXC11O43248 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.2■□□□□ 0.5
HOXC11O43248 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.2■□□□□ 0.5
HOXC11O43248 RPL13AP23-201ENST00000480739 586 ntBASIC18.2■□□□□ 0.5
HOXC11O43248 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 KRT18P58-201ENST00000527480 1120 ntBASIC18.2■□□□□ 0.5
HOXC11O43248 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
HOXC11O43248 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.2■□□□□ 0.5
HOXC11O43248 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.2■□□□□ 0.5
HOXC11O43248 MTDHP4-201ENST00000600287 670 ntBASIC18.2■□□□□ 0.5
HOXC11O43248 AC117500.6-201ENST00000624871 588 ntBASIC18.2■□□□□ 0.5
HOXC11O43248 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 AL096828.2-201ENST00000567259 1965 ntBASIC18.2■□□□□ 0.5
HOXC11O43248 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
HOXC11O43248 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC11O43248 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
HOXC11O43248 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.19■□□□□ 0.5
HOXC11O43248 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HOXC11O43248 AC103564.2-201ENST00000432853 1299 ntBASIC18.19■□□□□ 0.5
HOXC11O43248 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.19■□□□□ 0.5
HOXC11O43248 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.19■□□□□ 0.5
HOXC11O43248 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 IGHV3-22-201ENST00000520721 359 ntBASIC18.19■□□□□ 0.5
HOXC11O43248 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.19■□□□□ 0.5
HOXC11O43248 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.19■□□□□ 0.5
HOXC11O43248 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
HOXC11O43248 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HOXC11O43248 AC093677.2-201ENST00000600169 1863 ntBASIC18.19■□□□□ 0.5
HOXC11O43248 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.19■□□□□ 0.5
HOXC11O43248 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HOXC11O43248 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HOXC11O43248 AC107918.4-202ENST00000641623 219 ntBASIC18.19■□□□□ 0.5
HOXC11O43248 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 WIZP1-201ENST00000531444 2299 ntBASIC18.19■□□□□ 0.5
HOXC11O43248 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.19■□□□□ 0.5
HOXC11O43248 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.19■□□□□ 0.5
HOXC11O43248 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.19■□□□□ 0.5
HOXC11O43248 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC11O43248 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC11O43248 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC11O43248 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC11O43248 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.18■□□□□ 0.5
HOXC11O43248 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC11O43248 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.18■□□□□ 0.5
HOXC11O43248 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC11O43248 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC11O43248 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
HOXC11O43248 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.18■□□□□ 0.5
HOXC11O43248 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC11O43248 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.18■□□□□ 0.5
HOXC11O43248 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC11O43248 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.18■□□□□ 0.5
HOXC11O43248 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.18■□□□□ 0.5
HOXC11O43248 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.18■□□□□ 0.5
HOXC11O43248 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.18■□□□□ 0.5
HOXC11O43248 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.18■□□□□ 0.5
HOXC11O43248 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.18■□□□□ 0.5
HOXC11O43248 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.18■□□□□ 0.5
HOXC11O43248 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms