Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 AC140113.2-201ENST00000604370 208 ntBASIC21.11■□□□□ 0.97
DDX4Q9NQI0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 SPDYE21P-201ENST00000413323 827 ntBASIC21.1■□□□□ 0.97
DDX4Q9NQI0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 AL022326.1-202ENST00000641533 845 ntBASIC21.1■□□□□ 0.97
DDX4Q9NQI0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX4Q9NQI0 AC018445.3-201ENST00000624177 1945 ntBASIC21.1■□□□□ 0.97
DDX4Q9NQI0 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 LAGE3P1-201ENST00000425356 484 ntBASIC21.09■□□□□ 0.97
DDX4Q9NQI0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 UNC93B6-202ENST00000528242 690 ntBASIC21.09■□□□□ 0.97
DDX4Q9NQI0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 AC092865.5-201ENST00000545435 363 ntBASIC21.09■□□□□ 0.97
DDX4Q9NQI0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 Z83851.2-201ENST00000609564 659 ntBASIC21.09■□□□□ 0.97
DDX4Q9NQI0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX4Q9NQI0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 AC120498.9-201ENST00000339021 3867 ntBASIC21.08■□□□□ 0.97
DDX4Q9NQI0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 AC022898.2-201ENST00000616822 1312 ntBASIC21.08■□□□□ 0.97
DDX4Q9NQI0 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 KRT18P27-201ENST00000427733 1299 ntBASIC21.08■□□□□ 0.97
DDX4Q9NQI0 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 SDCCAG3P1-201ENST00000589292 1150 ntBASIC21.08■□□□□ 0.97
DDX4Q9NQI0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 SIGLEC16-201ENST00000599858 1437 ntBASIC21.08■□□□□ 0.97
DDX4Q9NQI0 AL356488.2-201ENST00000602755 427 ntBASIC21.08■□□□□ 0.97
DDX4Q9NQI0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX4Q9NQI0 AL049757.1-201ENST00000616842 1596 ntBASIC21.08■□□□□ 0.97
DDX4Q9NQI0 AC073592.5-201ENST00000624854 528 ntBASIC21.08■□□□□ 0.97
DDX4Q9NQI0 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.08■□□□□ 0.96
DDX4Q9NQI0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
DDX4Q9NQI0 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.08■□□□□ 0.96
DDX4Q9NQI0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 INIP-202ENST00000374236 874 ntTSL 2 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms