Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CCDC42Q96M95 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC42Q96M95 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 AC132938.6-201ENST00000623828 1655 ntBASIC19.4■□□□□ 0.7
CCDC42Q96M95 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 AC098590.1-201ENST00000468126 897 ntBASIC19.4■□□□□ 0.7
CCDC42Q96M95 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 AC100803.2-201ENST00000562459 1963 ntBASIC19.4■□□□□ 0.7
CCDC42Q96M95 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC42Q96M95 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC42Q96M95 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC42Q96M95 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.7
CCDC42Q96M95 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC42Q96M95 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC42Q96M95 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC42Q96M95 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC42Q96M95 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 GCSHP5-201ENST00000443090 522 ntBASIC19.39■□□□□ 0.69
CCDC42Q96M95 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 AC010240.3-201ENST00000607688 395 ntBASIC19.39■□□□□ 0.69
CCDC42Q96M95 AC116562.4-202ENST00000641738 218 ntBASIC19.39■□□□□ 0.69
CCDC42Q96M95 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC42Q96M95 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC42Q96M95 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC42Q96M95 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC42Q96M95 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC42Q96M95 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC42Q96M95 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC42Q96M95 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC42Q96M95 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC42Q96M95 RBM17P1-201ENST00000453646 1190 ntBASIC19.38■□□□□ 0.69
CCDC42Q96M95 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 AC133963.1-201ENST00000504166 1679 ntBASIC19.38■□□□□ 0.69
CCDC42Q96M95 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC42Q96M95 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC42Q96M95 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CCDC42Q96M95 AC099398.1-201ENST00000567919 2776 ntBASIC19.38■□□□□ 0.69
CCDC42Q96M95 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms