Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 AP000593.1-201ENST00000393668 712 ntBASIC17.24■□□□□ 0.35
VMP1Q96GC9 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 KRT18P41-201ENST00000518924 1277 ntBASIC17.24■□□□□ 0.35
VMP1Q96GC9 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 MIR3180-4-201ENST00000582223 153 ntBASIC17.24■□□□□ 0.35
VMP1Q96GC9 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.24■□□□□ 0.35
VMP1Q96GC9 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 AL031133.1-201ENST00000406807 723 ntBASIC17.23■□□□□ 0.35
VMP1Q96GC9 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 AC009065.1-201ENST00000564055 1225 ntBASIC17.23■□□□□ 0.35
VMP1Q96GC9 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VMP1Q96GC9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.23■□□□□ 0.35
VMP1Q96GC9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.22■□□□□ 0.35
VMP1Q96GC9 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 AL121956.5-201ENST00000625261 221 ntBASIC17.22■□□□□ 0.35
VMP1Q96GC9 AL157888.1-201ENST00000631930 593 ntBASIC17.22■□□□□ 0.35
VMP1Q96GC9 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VMP1Q96GC9 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VMP1Q96GC9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VMP1Q96GC9 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VMP1Q96GC9 AC073592.3-201ENST00000625118 1834 ntBASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms