Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.08■□□□□ 0.49
TTC28Q96AY4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
TTC28Q96AY4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TTC28Q96AY4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
TTC28Q96AY4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TTC28Q96AY4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TTC28Q96AY4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TTC28Q96AY4 AC096633.1-201ENST00000422446 749 ntBASIC18.08■□□□□ 0.49
TTC28Q96AY4 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.08■□□□□ 0.49
TTC28Q96AY4 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
TTC28Q96AY4 KRT17P8-201ENST00000540749 863 ntBASIC18.08■□□□□ 0.49
TTC28Q96AY4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.08■□□□□ 0.49
TTC28Q96AY4 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TTC28Q96AY4 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TTC28Q96AY4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.08■□□□□ 0.48
TTC28Q96AY4 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TTC28Q96AY4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.08■□□□□ 0.48
TTC28Q96AY4 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.08■□□□□ 0.48
TTC28Q96AY4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TTC28Q96AY4 RNA5SP423-201ENST00000517127 109 ntBASIC18.08■□□□□ 0.48
TTC28Q96AY4 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.08■□□□□ 0.48
TTC28Q96AY4 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.08■□□□□ 0.48
TTC28Q96AY4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.08■□□□□ 0.48
TTC28Q96AY4 LINC01225-203ENST00000563550 1244 ntBASIC18.08■□□□□ 0.48
TTC28Q96AY4 NAT9-224ENST00000583757 583 ntTSL 3 BASIC18.08■□□□□ 0.48
TTC28Q96AY4 AC084121.4-201ENST00000641598 221 ntBASIC18.08■□□□□ 0.48
TTC28Q96AY4 AF228730.8-201ENST00000642140 221 ntBASIC18.08■□□□□ 0.48
TTC28Q96AY4 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.08■□□□□ 0.48
TTC28Q96AY4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.08■□□□□ 0.48
TTC28Q96AY4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TTC28Q96AY4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
TTC28Q96AY4 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TTC28Q96AY4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 FAM86MP-201ENST00000340703 885 ntBASIC18.06■□□□□ 0.48
TTC28Q96AY4 TREML5P-201ENST00000421694 576 ntBASIC18.06■□□□□ 0.48
TTC28Q96AY4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 IRX1P1-201ENST00000438849 1838 ntBASIC18.06■□□□□ 0.48
TTC28Q96AY4 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 AC002056.1-201ENST00000395613 760 ntBASIC18.06■□□□□ 0.48
TTC28Q96AY4 DGCR5-201ENST00000399539 862 ntBASIC18.06■□□□□ 0.48
TTC28Q96AY4 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 INE1-201ENST00000456273 945 ntBASIC18.06■□□□□ 0.48
TTC28Q96AY4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 ARL16-210ENST00000574938 751 ntTSL 2 BASIC18.06■□□□□ 0.48
TTC28Q96AY4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TTC28Q96AY4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TTC28Q96AY4 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TTC28Q96AY4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TTC28Q96AY4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.05■□□□□ 0.48
TTC28Q96AY4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TTC28Q96AY4 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.05■□□□□ 0.48
TTC28Q96AY4 FAM86C2P-203ENST00000528684 1004 ntBASIC18.05■□□□□ 0.48
TTC28Q96AY4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms