Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC005104.2-201ENST00000427818 678 ntBASIC17.97■□□□□ 0.47
HMGB4Q8WW32 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 AC007967.3-201ENST00000434308 558 ntBASIC17.97■□□□□ 0.47
HMGB4Q8WW32 AL591424.1-201ENST00000442569 1213 ntBASIC17.97■□□□□ 0.47
HMGB4Q8WW32 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 AC105339.3-201ENST00000560043 636 ntBASIC17.97■□□□□ 0.47
HMGB4Q8WW32 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 AP002414.3-201ENST00000589352 1468 ntBASIC17.96■□□□□ 0.47
HMGB4Q8WW32 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 BX005266.1-201ENST00000473402 457 ntBASIC17.96■□□□□ 0.47
HMGB4Q8WW32 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 AL691403.2-201ENST00000618460 490 ntBASIC17.96■□□□□ 0.47
HMGB4Q8WW32 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 AC107918.4-202ENST00000641623 219 ntBASIC17.96■□□□□ 0.47
HMGB4Q8WW32 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 AC132938.6-201ENST00000623828 1655 ntBASIC17.96■□□□□ 0.47
HMGB4Q8WW32 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB4Q8WW32 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
HMGB4Q8WW32 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.96■□□□□ 0.46
HMGB4Q8WW32 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 KRT18P3-201ENST00000451602 1288 ntBASIC17.95■□□□□ 0.46
HMGB4Q8WW32 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 AC010327.4-202ENST00000591484 748 ntBASIC17.95■□□□□ 0.46
HMGB4Q8WW32 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 AP000867.4-201ENST00000641616 219 ntBASIC17.95■□□□□ 0.46
HMGB4Q8WW32 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGB4Q8WW32 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
HMGB4Q8WW32 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB4Q8WW32 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGB4Q8WW32 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB4Q8WW32 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGB4Q8WW32 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB4Q8WW32 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB4Q8WW32 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms