Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 SIGLEC16-201ENST00000599858 1437 ntBASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 AC002310.6-201ENST00000624451 1377 ntBASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 AC122714.2-201ENST00000502787 707 ntBASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 AC092865.6-201ENST00000642101 219 ntBASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.33■□□□□ 0.52
SLC44A3Q8N4M1 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 CRYGEP-201ENST00000412192 528 ntBASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 ALG1L5P-201ENST00000482043 771 ntBASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 C20orf181-201ENST00000623918 480 ntBASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC44A3Q8N4M1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 SPDYE21P-201ENST00000413323 827 ntBASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 AC096633.1-201ENST00000422446 749 ntBASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 AL589182.2-201ENST00000619332 1049 ntBASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SLC44A3Q8N4M1 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 AC010460.3-201ENST00000511359 1579 ntBASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.3■□□□□ 0.52
SLC44A3Q8N4M1 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms