Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC22.01■■□□□ 1.11
USP48Q86UV5 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC22.01■■□□□ 1.11
USP48Q86UV5 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC22.01■■□□□ 1.11
USP48Q86UV5 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 GGCT-205ENST00000409436 954 ntTSL 3 BASIC22.01■■□□□ 1.11
USP48Q86UV5 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC22.01■■□□□ 1.11
USP48Q86UV5 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC22.01■■□□□ 1.11
USP48Q86UV5 AL139424.1-201ENST00000607572 797 ntBASIC22.01■■□□□ 1.11
USP48Q86UV5 PRKN-208ENST00000610470 531 ntTSL 2 BASIC22.01■■□□□ 1.11
USP48Q86UV5 PRKN-209ENST00000612485 225 ntTSL 5 BASIC22.01■■□□□ 1.11
USP48Q86UV5 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC22.01■■□□□ 1.11
USP48Q86UV5 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
USP48Q86UV5 KATNBL1P6-202ENST00000562413 1466 ntBASIC22.01■■□□□ 1.11
USP48Q86UV5 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
USP48Q86UV5 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC22■■□□□ 1.11
USP48Q86UV5 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
USP48Q86UV5 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP48Q86UV5 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP48Q86UV5 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP48Q86UV5 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP48Q86UV5 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
USP48Q86UV5 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC22■■□□□ 1.11
USP48Q86UV5 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP48Q86UV5 HNRNPDP1-201ENST00000439535 754 ntBASIC22■■□□□ 1.11
USP48Q86UV5 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC22■■□□□ 1.11
USP48Q86UV5 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC22■■□□□ 1.11
USP48Q86UV5 MIR3180-4-201ENST00000582223 153 ntBASIC22■■□□□ 1.11
USP48Q86UV5 NAT14-202ENST00000587400 416 ntTSL 5 BASIC22■■□□□ 1.11
USP48Q86UV5 LINC02084-201ENST00000606069 1096 ntBASIC22■■□□□ 1.11
USP48Q86UV5 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC22■■□□□ 1.11
USP48Q86UV5 AC116407.3-201ENST00000623905 1129 ntBASIC22■■□□□ 1.11
USP48Q86UV5 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
USP48Q86UV5 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC22■■□□□ 1.11
USP48Q86UV5 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP48Q86UV5 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
USP48Q86UV5 NOC2LP2-201ENST00000407594 1944 ntBASIC22■■□□□ 1.11
USP48Q86UV5 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
USP48Q86UV5 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
USP48Q86UV5 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
USP48Q86UV5 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.99■■□□□ 1.11
USP48Q86UV5 AC068880.1-201ENST00000507289 2297 ntBASIC21.99■■□□□ 1.11
USP48Q86UV5 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
USP48Q86UV5 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC21.99■■□□□ 1.11
USP48Q86UV5 AC096582.2-201ENST00000510860 516 ntBASIC21.99■■□□□ 1.11
USP48Q86UV5 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.99■■□□□ 1.11
USP48Q86UV5 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC21.99■■□□□ 1.11
USP48Q86UV5 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.99■■□□□ 1.11
USP48Q86UV5 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.99■■□□□ 1.11
USP48Q86UV5 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.99■■□□□ 1.11
USP48Q86UV5 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.99■■□□□ 1.11
USP48Q86UV5 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
USP48Q86UV5 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.99■■□□□ 1.11
USP48Q86UV5 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.99■■□□□ 1.11
USP48Q86UV5 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.99■■□□□ 1.11
USP48Q86UV5 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP48Q86UV5 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.98■■□□□ 1.11
USP48Q86UV5 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
USP48Q86UV5 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC21.98■■□□□ 1.11
USP48Q86UV5 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.98■■□□□ 1.11
USP48Q86UV5 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.98■■□□□ 1.11
USP48Q86UV5 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC21.98■■□□□ 1.11
USP48Q86UV5 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.98■■□□□ 1.11
USP48Q86UV5 AL355385.1-201ENST00000606123 409 ntBASIC21.98■■□□□ 1.11
USP48Q86UV5 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.98■■□□□ 1.11
USP48Q86UV5 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.98■■□□□ 1.11
USP48Q86UV5 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP48Q86UV5 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
USP48Q86UV5 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
USP48Q86UV5 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms