Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CSMD3Q7Z407 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC12.43□□□□□ -0.42
CSMD3Q7Z407 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CSMD3Q7Z407 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC12.43□□□□□ -0.42
CSMD3Q7Z407 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 AC002472.2-201ENST00000442739 958 ntBASIC12.42□□□□□ -0.42
CSMD3Q7Z407 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 AC010507.1-201ENST00000633895 436 ntBASIC12.42□□□□□ -0.42
CSMD3Q7Z407 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 KRT8P47-201ENST00000604727 1398 ntBASIC12.42□□□□□ -0.42
CSMD3Q7Z407 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 IGHV3OR16-6-201ENST00000568775 360 ntBASIC12.42□□□□□ -0.42
CSMD3Q7Z407 SIRPAP1-201ENST00000448467 1770 ntBASIC12.42□□□□□ -0.42
CSMD3Q7Z407 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 AC015911.4-201ENST00000588022 1070 ntBASIC12.42□□□□□ -0.42
CSMD3Q7Z407 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CSMD3Q7Z407 AC132938.5-201ENST00000624980 1813 ntBASIC12.42□□□□□ -0.42
CSMD3Q7Z407 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 MIR661-201ENST00000384842 89 ntBASIC12.41□□□□□ -0.42
CSMD3Q7Z407 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 PAWRP1-201ENST00000451083 565 ntBASIC12.41□□□□□ -0.42
CSMD3Q7Z407 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 POLD4-207ENST00000531239 584 ntTSL 2 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 MAL2-202ENST00000531508 892 ntTSL 3 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 RHOQP3-201ENST00000437982 621 ntBASIC12.41□□□□□ -0.42
CSMD3Q7Z407 GAPDHP21-201ENST00000450301 1010 ntBASIC12.41□□□□□ -0.42
CSMD3Q7Z407 LINC00628-201ENST00000628516 1289 ntBASIC12.41□□□□□ -0.42
CSMD3Q7Z407 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 AC051619.7-201ENST00000568314 623 ntBASIC12.41□□□□□ -0.42
CSMD3Q7Z407 COBL-210ENST00000632460 1941 ntTSL 5 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 SP100-208ENST00000427101 1922 ntTSL 2 BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CSMD3Q7Z407 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 MEIS3P1-201ENST00000495167 958 ntBASIC12.4□□□□□ -0.42
CSMD3Q7Z407 MIR4745-201ENST00000577608 62 ntBASIC12.4□□□□□ -0.42
CSMD3Q7Z407 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 AC092902.6-201ENST00000641783 218 ntBASIC12.4□□□□□ -0.42
CSMD3Q7Z407 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC12.4□□□□□ -0.42
CSMD3Q7Z407 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms