Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ATL3Q6DD88 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATL3Q6DD88 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATL3Q6DD88 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATL3Q6DD88 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATL3Q6DD88 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATL3Q6DD88 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 AC024563.2-201ENST00000603282 481 ntBASIC20.52■□□□□ 0.88
ATL3Q6DD88 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ATL3Q6DD88 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
ATL3Q6DD88 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
ATL3Q6DD88 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ATL3Q6DD88 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
ATL3Q6DD88 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.52■□□□□ 0.87
ATL3Q6DD88 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
ATL3Q6DD88 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.51■□□□□ 0.87
ATL3Q6DD88 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.51■□□□□ 0.87
ATL3Q6DD88 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
ATL3Q6DD88 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.51■□□□□ 0.87
ATL3Q6DD88 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ATL3Q6DD88 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.51■□□□□ 0.87
ATL3Q6DD88 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.51■□□□□ 0.87
ATL3Q6DD88 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.51■□□□□ 0.87
ATL3Q6DD88 AC141257.4-201ENST00000634557 245 ntBASIC20.51■□□□□ 0.87
ATL3Q6DD88 AC136944.6-201ENST00000634818 245 ntBASIC20.51■□□□□ 0.87
ATL3Q6DD88 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.51■□□□□ 0.87
ATL3Q6DD88 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ATL3Q6DD88 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
ATL3Q6DD88 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 AC009949.1-201ENST00000623048 1830 ntBASIC20.5■□□□□ 0.87
ATL3Q6DD88 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 KRT18P22-201ENST00000402024 1347 ntBASIC20.5■□□□□ 0.87
ATL3Q6DD88 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
ATL3Q6DD88 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ATL3Q6DD88 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 REXO1L11P-201ENST00000620964 1927 ntBASIC20.49■□□□□ 0.87
ATL3Q6DD88 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.49■□□□□ 0.87
ATL3Q6DD88 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.49■□□□□ 0.87
ATL3Q6DD88 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.49■□□□□ 0.87
ATL3Q6DD88 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.49■□□□□ 0.87
ATL3Q6DD88 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.49■□□□□ 0.87
ATL3Q6DD88 AL138966.2-201ENST00000621997 464 ntBASIC20.49■□□□□ 0.87
ATL3Q6DD88 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ATL3Q6DD88 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.49■□□□□ 0.87
ATL3Q6DD88 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.49■□□□□ 0.87
ATL3Q6DD88 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.49■□□□□ 0.87
ATL3Q6DD88 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ATL3Q6DD88 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ATL3Q6DD88 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ATL3Q6DD88 LINC01568-207ENST00000641790 1380 ntBASIC20.48■□□□□ 0.87
ATL3Q6DD88 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ATL3Q6DD88 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
ATL3Q6DD88 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ATL3Q6DD88 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
ATL3Q6DD88 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
ATL3Q6DD88 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ATL3Q6DD88 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ATL3Q6DD88 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms