Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SF3A1Q15459 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SF3A1Q15459 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
SF3A1Q15459 KRT18P22-201ENST00000402024 1347 ntBASIC20.78■□□□□ 0.92
SF3A1Q15459 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.78■□□□□ 0.92
SF3A1Q15459 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SF3A1Q15459 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SF3A1Q15459 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SF3A1Q15459 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.78■□□□□ 0.92
SF3A1Q15459 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SF3A1Q15459 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.78■□□□□ 0.92
SF3A1Q15459 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.78■□□□□ 0.92
SF3A1Q15459 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.78■□□□□ 0.92
SF3A1Q15459 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SF3A1Q15459 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SF3A1Q15459 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SF3A1Q15459 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SF3A1Q15459 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SF3A1Q15459 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SF3A1Q15459 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
SF3A1Q15459 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SF3A1Q15459 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SF3A1Q15459 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.77■□□□□ 0.92
SF3A1Q15459 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.77■□□□□ 0.92
SF3A1Q15459 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SF3A1Q15459 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SF3A1Q15459 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.77■□□□□ 0.92
SF3A1Q15459 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
SF3A1Q15459 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SF3A1Q15459 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.77■□□□□ 0.92
SF3A1Q15459 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.77■□□□□ 0.92
SF3A1Q15459 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.77■□□□□ 0.92
SF3A1Q15459 MIR3917-201ENST00000580971 93 ntBASIC20.77■□□□□ 0.92
SF3A1Q15459 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SF3A1Q15459 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SF3A1Q15459 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SF3A1Q15459 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SF3A1Q15459 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SF3A1Q15459 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SF3A1Q15459 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SF3A1Q15459 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SF3A1Q15459 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SF3A1Q15459 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SF3A1Q15459 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SF3A1Q15459 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.77■□□□□ 0.91
SF3A1Q15459 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.77■□□□□ 0.91
SF3A1Q15459 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
SF3A1Q15459 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SF3A1Q15459 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SF3A1Q15459 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SF3A1Q15459 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SF3A1Q15459 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.76■□□□□ 0.91
SF3A1Q15459 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.76■□□□□ 0.91
SF3A1Q15459 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SF3A1Q15459 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.76■□□□□ 0.91
SF3A1Q15459 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC20.76■□□□□ 0.91
SF3A1Q15459 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SF3A1Q15459 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SF3A1Q15459 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SF3A1Q15459 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.76■□□□□ 0.91
SF3A1Q15459 AC145285.6-201ENST00000604632 637 ntBASIC20.76■□□□□ 0.91
SF3A1Q15459 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.76■□□□□ 0.91
SF3A1Q15459 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SF3A1Q15459 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.75■□□□□ 0.91
SF3A1Q15459 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
SF3A1Q15459 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.75■□□□□ 0.91
SF3A1Q15459 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
SF3A1Q15459 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
SF3A1Q15459 AC141257.4-201ENST00000634557 245 ntBASIC20.75■□□□□ 0.91
SF3A1Q15459 AC136944.6-201ENST00000634818 245 ntBASIC20.75■□□□□ 0.91
SF3A1Q15459 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.75■□□□□ 0.91
SF3A1Q15459 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.75■□□□□ 0.91
SF3A1Q15459 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SF3A1Q15459 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms