Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL7A1Q02388 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC12.77□□□□□ -0.37
COL7A1Q02388 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL7A1Q02388 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC12.77□□□□□ -0.37
COL7A1Q02388 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC12.77□□□□□ -0.37
COL7A1Q02388 PMS2P4-201ENST00000412466 1052 ntBASIC12.77□□□□□ -0.37
COL7A1Q02388 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC12.77□□□□□ -0.37
COL7A1Q02388 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC12.77□□□□□ -0.37
COL7A1Q02388 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL7A1Q02388 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.77□□□□□ -0.37
COL7A1Q02388 AC004790.2-201ENST00000623588 572 ntBASIC12.77□□□□□ -0.37
COL7A1Q02388 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL7A1Q02388 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL7A1Q02388 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL7A1Q02388 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.37
COL7A1Q02388 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL7A1Q02388 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL7A1Q02388 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
COL7A1Q02388 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
COL7A1Q02388 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 BSG-215ENST00000618006 1329 ntTSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
COL7A1Q02388 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC12.76□□□□□ -0.37
COL7A1Q02388 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC12.76□□□□□ -0.37
COL7A1Q02388 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC12.76□□□□□ -0.37
COL7A1Q02388 AL008721.1-201ENST00000609964 604 ntBASIC12.76□□□□□ -0.37
COL7A1Q02388 AC004706.3-202ENST00000621574 984 ntBASIC12.76□□□□□ -0.37
COL7A1Q02388 AL805961.1-202ENST00000641562 540 ntBASIC12.76□□□□□ -0.37
COL7A1Q02388 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC12.76□□□□□ -0.37
COL7A1Q02388 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
COL7A1Q02388 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC12.76□□□□□ -0.37
COL7A1Q02388 COX5A-202ENST00000562233 441 ntTSL 3 BASIC12.76□□□□□ -0.37
COL7A1Q02388 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.76□□□□□ -0.37
COL7A1Q02388 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC12.76□□□□□ -0.37
COL7A1Q02388 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC12.76□□□□□ -0.37
COL7A1Q02388 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
COL7A1Q02388 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
COL7A1Q02388 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC12.76□□□□□ -0.37
COL7A1Q02388 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL7A1Q02388 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
COL7A1Q02388 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 OR8S1-201ENST00000310194 1080 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
COL7A1Q02388 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC12.75□□□□□ -0.37
COL7A1Q02388 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.75□□□□□ -0.37
COL7A1Q02388 ACTG1P14-201ENST00000446382 1122 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 IGHV3-65-201ENST00000523210 341 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
COL7A1Q02388 AL022326.1-202ENST00000641533 845 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 SIRPAP1-201ENST00000448467 1770 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
COL7A1Q02388 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC12.75□□□□□ -0.37
COL7A1Q02388 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC12.75□□□□□ -0.37
COL7A1Q02388 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
COL7A1Q02388 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC12.75□□□□□ -0.37
COL7A1Q02388 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 EDF1-203ENST00000371649 790 ntTSL 2 BASIC12.75□□□□□ -0.37
COL7A1Q02388 HLA-DRB6-201ENST00000411500 1235 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC12.75□□□□□ -0.37
COL7A1Q02388 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC12.75□□□□□ -0.37
COL7A1Q02388 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 AC004449.1-201ENST00000564240 433 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
COL7A1Q02388 AC068137.2-201ENST00000605408 478 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC12.75□□□□□ -0.37
COL7A1Q02388 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
COL7A1Q02388 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC12.75□□□□□ -0.37
COL7A1Q02388 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC12.75□□□□□ -0.37
COL7A1Q02388 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms