Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC010240.3-201ENST00000607688 395 ntBASIC17.66■□□□□ 0.42
PKNOX1P55347 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PKNOX1P55347 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.66■□□□□ 0.42
PKNOX1P55347 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 AC141586.5-201ENST00000624546 2050 ntBASIC17.66■□□□□ 0.42
PKNOX1P55347 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.66■□□□□ 0.42
PKNOX1P55347 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.66■□□□□ 0.42
PKNOX1P55347 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.66■□□□□ 0.42
PKNOX1P55347 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.66■□□□□ 0.42
PKNOX1P55347 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PKNOX1P55347 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.65■□□□□ 0.42
PKNOX1P55347 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PKNOX1P55347 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.65■□□□□ 0.42
PKNOX1P55347 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.65■□□□□ 0.42
PKNOX1P55347 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.65■□□□□ 0.42
PKNOX1P55347 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 AC006116.8-202ENST00000587620 1550 ntBASIC17.65■□□□□ 0.42
PKNOX1P55347 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
PKNOX1P55347 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PKNOX1P55347 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PKNOX1P55347 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.65■□□□□ 0.42
PKNOX1P55347 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
PKNOX1P55347 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
PKNOX1P55347 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.64■□□□□ 0.42
PKNOX1P55347 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
PKNOX1P55347 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
PKNOX1P55347 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
PKNOX1P55347 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
PKNOX1P55347 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.64■□□□□ 0.41
PKNOX1P55347 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PKNOX1P55347 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
PKNOX1P55347 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.64■□□□□ 0.41
PKNOX1P55347 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.64■□□□□ 0.41
PKNOX1P55347 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.64■□□□□ 0.41
PKNOX1P55347 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.64■□□□□ 0.41
PKNOX1P55347 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PKNOX1P55347 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PKNOX1P55347 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PKNOX1P55347 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PKNOX1P55347 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 AD000864.1-201ENST00000624076 2295 ntBASIC17.63■□□□□ 0.41
PKNOX1P55347 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.63■□□□□ 0.41
PKNOX1P55347 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.63■□□□□ 0.41
PKNOX1P55347 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.63■□□□□ 0.41
PKNOX1P55347 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.63■□□□□ 0.41
PKNOX1P55347 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.63■□□□□ 0.41
PKNOX1P55347 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PKNOX1P55347 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 AP006294.2-201ENST00000641667 209 ntBASIC17.63■□□□□ 0.41
PKNOX1P55347 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
PKNOX1P55347 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
PKNOX1P55347 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.63■□□□□ 0.41
PKNOX1P55347 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms