Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH11P55287 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CDH11P55287 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH11P55287 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH11P55287 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CDH11P55287 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH11P55287 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH11P55287 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH11P55287 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH11P55287 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH11P55287 BX664615.1-201ENST00000443558 458 ntBASIC16.49■□□□□ 0.23
CDH11P55287 AC104076.2-201ENST00000448912 469 ntBASIC16.49■□□□□ 0.23
CDH11P55287 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH11P55287 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH11P55287 AC092338.2-201ENST00000568827 1415 ntBASIC16.49■□□□□ 0.23
CDH11P55287 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CDH11P55287 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH11P55287 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH11P55287 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH11P55287 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH11P55287 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CDH11P55287 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CDH11P55287 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CDH11P55287 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CDH11P55287 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH11P55287 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CDH11P55287 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH11P55287 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.48■□□□□ 0.23
CDH11P55287 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 MIR564-202ENST00000385049 94 ntBASIC16.48■□□□□ 0.23
CDH11P55287 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
CDH11P55287 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.48■□□□□ 0.23
CDH11P55287 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH11P55287 CA15P1-201ENST00000481698 905 ntBASIC16.48■□□□□ 0.23
CDH11P55287 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH11P55287 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.48■□□□□ 0.23
CDH11P55287 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH11P55287 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
CDH11P55287 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH11P55287 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH11P55287 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
CDH11P55287 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH11P55287 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH11P55287 AC009053.2-201ENST00000563701 2365 ntBASIC16.47■□□□□ 0.23
CDH11P55287 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CDH11P55287 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH11P55287 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CDH11P55287 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
CDH11P55287 AK4P3-201ENST00000418260 669 ntBASIC16.47■□□□□ 0.23
CDH11P55287 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH11P55287 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 AL512604.3-201ENST00000569583 964 ntBASIC16.47■□□□□ 0.23
CDH11P55287 AC087388.1-201ENST00000571370 1112 ntBASIC16.47■□□□□ 0.23
CDH11P55287 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH11P55287 NTF6B-201ENST00000591913 560 ntBASIC16.47■□□□□ 0.23
CDH11P55287 AL023803.3-201ENST00000615559 522 ntBASIC16.47■□□□□ 0.23
CDH11P55287 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH11P55287 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CDH11P55287 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH11P55287 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CDH11P55287 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
CDH11P55287 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH11P55287 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms