Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.74■□□□□ 0.91
CTCFP49711 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTCFP49711 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CTCFP49711 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.74■□□□□ 0.91
CTCFP49711 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTCFP49711 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTCFP49711 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTCFP49711 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTCFP49711 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CTCFP49711 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CTCFP49711 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CTCFP49711 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.73■□□□□ 0.91
CTCFP49711 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
CTCFP49711 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.73■□□□□ 0.91
CTCFP49711 SLC25A6P5-201ENST00000435663 894 ntBASIC20.73■□□□□ 0.91
CTCFP49711 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC20.73■□□□□ 0.91
CTCFP49711 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC20.73■□□□□ 0.91
CTCFP49711 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC20.73■□□□□ 0.91
CTCFP49711 AL353135.1-201ENST00000606729 504 ntBASIC20.73■□□□□ 0.91
CTCFP49711 AC004877.2-201ENST00000623941 599 ntBASIC20.73■□□□□ 0.91
CTCFP49711 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CTCFP49711 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTCFP49711 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.73■□□□□ 0.91
CTCFP49711 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.72■□□□□ 0.91
CTCFP49711 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.72■□□□□ 0.91
CTCFP49711 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
CTCFP49711 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC20.72■□□□□ 0.91
CTCFP49711 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC20.72■□□□□ 0.91
CTCFP49711 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.72■□□□□ 0.91
CTCFP49711 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.72■□□□□ 0.91
CTCFP49711 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CTCFP49711 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CTCFP49711 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.72■□□□□ 0.91
CTCFP49711 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CTCFP49711 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTCFP49711 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
CTCFP49711 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
CTCFP49711 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.71■□□□□ 0.91
CTCFP49711 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC20.71■□□□□ 0.91
CTCFP49711 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.71■□□□□ 0.91
CTCFP49711 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 AC091812.2-201ENST00000619081 385 ntBASIC20.71■□□□□ 0.91
CTCFP49711 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.71■□□□□ 0.91
CTCFP49711 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.71■□□□□ 0.91
CTCFP49711 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.71■□□□□ 0.91
CTCFP49711 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CTCFP49711 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.71■□□□□ 0.91
CTCFP49711 BCAR1-209ENST00000546196 1340 ntBASIC20.71■□□□□ 0.91
CTCFP49711 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CTCFP49711 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
CTCFP49711 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.71■□□□□ 0.91
CTCFP49711 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTCFP49711 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CTCFP49711 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CTCFP49711 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.7■□□□□ 0.9
CTCFP49711 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.7■□□□□ 0.9
CTCFP49711 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC20.7■□□□□ 0.9
CTCFP49711 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CTCFP49711 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CTCFP49711 NME2P1-201ENST00000426182 414 ntBASIC20.7■□□□□ 0.9
CTCFP49711 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.7■□□□□ 0.9
CTCFP49711 NAA50-208ENST00000497255 789 ntTSL 5 BASIC20.7■□□□□ 0.9
CTCFP49711 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CTCFP49711 KRT19P2-202ENST00000557173 1012 ntBASIC20.7■□□□□ 0.9
CTCFP49711 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms