Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.6■□□□□ 0.41
SHMT2P34897 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.6■□□□□ 0.41
SHMT2P34897 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 TSSC2-201ENST00000450217 709 ntBASIC17.6■□□□□ 0.41
SHMT2P34897 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.6■□□□□ 0.41
SHMT2P34897 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.6■□□□□ 0.41
SHMT2P34897 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.6■□□□□ 0.41
SHMT2P34897 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.6■□□□□ 0.41
SHMT2P34897 AC004263.2-201ENST00000617183 678 ntBASIC17.6■□□□□ 0.41
SHMT2P34897 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SHMT2P34897 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.6■□□□□ 0.41
SHMT2P34897 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.6■□□□□ 0.41
SHMT2P34897 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.6■□□□□ 0.41
SHMT2P34897 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SHMT2P34897 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SHMT2P34897 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.59■□□□□ 0.41
SHMT2P34897 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
SHMT2P34897 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SHMT2P34897 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SHMT2P34897 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.59■□□□□ 0.41
SHMT2P34897 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 CHCHD2P8-201ENST00000429873 447 ntBASIC17.59■□□□□ 0.41
SHMT2P34897 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.59■□□□□ 0.41
SHMT2P34897 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.59■□□□□ 0.41
SHMT2P34897 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 AC090616.6-201ENST00000582640 721 ntBASIC17.59■□□□□ 0.41
SHMT2P34897 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.59■□□□□ 0.41
SHMT2P34897 AC093458.2-201ENST00000623150 629 ntBASIC17.59■□□□□ 0.41
SHMT2P34897 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.59■□□□□ 0.41
SHMT2P34897 AC099398.1-201ENST00000567919 2776 ntBASIC17.59■□□□□ 0.41
SHMT2P34897 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SHMT2P34897 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHMT2P34897 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.59■□□□□ 0.41
SHMT2P34897 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.59■□□□□ 0.41
SHMT2P34897 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SHMT2P34897 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SHMT2P34897 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SHMT2P34897 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHMT2P34897 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SHMT2P34897 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.58■□□□□ 0.41
SHMT2P34897 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHMT2P34897 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.58■□□□□ 0.41
SHMT2P34897 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHMT2P34897 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHMT2P34897 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHMT2P34897 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHMT2P34897 AC016734.2-201ENST00000624325 1377 ntBASIC17.58■□□□□ 0.4
SHMT2P34897 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHMT2P34897 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.58■□□□□ 0.4
SHMT2P34897 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.58■□□□□ 0.4
SHMT2P34897 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHMT2P34897 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.58■□□□□ 0.4
SHMT2P34897 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SHMT2P34897 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SHMT2P34897 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.58■□□□□ 0.4
SHMT2P34897 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHMT2P34897 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.58■□□□□ 0.4
SHMT2P34897 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHMT2P34897 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHMT2P34897 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
SHMT2P34897 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.57■□□□□ 0.4
SHMT2P34897 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.57■□□□□ 0.4
SHMT2P34897 GUSBP12-201ENST00000513727 720 ntBASIC17.57■□□□□ 0.4
SHMT2P34897 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.57■□□□□ 0.4
SHMT2P34897 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.57■□□□□ 0.4
SHMT2P34897 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.57■□□□□ 0.4
SHMT2P34897 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHMT2P34897 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms