Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
APOEP02649 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.84■□□□□ 0.61
APOEP02649 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
APOEP02649 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
APOEP02649 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
APOEP02649 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.84■□□□□ 0.61
APOEP02649 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
APOEP02649 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.84■□□□□ 0.61
APOEP02649 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.83■□□□□ 0.61
APOEP02649 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
APOEP02649 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.83■□□□□ 0.61
APOEP02649 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
APOEP02649 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.83■□□□□ 0.61
APOEP02649 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
APOEP02649 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
APOEP02649 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.61
APOEP02649 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
APOEP02649 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.83■□□□□ 0.61
APOEP02649 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.83■□□□□ 0.6
APOEP02649 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.83■□□□□ 0.6
APOEP02649 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.83■□□□□ 0.6
APOEP02649 CHCHD2P8-201ENST00000429873 447 ntBASIC18.83■□□□□ 0.6
APOEP02649 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.83■□□□□ 0.6
APOEP02649 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.83■□□□□ 0.6
APOEP02649 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.83■□□□□ 0.6
APOEP02649 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
APOEP02649 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.83■□□□□ 0.6
APOEP02649 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.83■□□□□ 0.6
APOEP02649 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
APOEP02649 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.82■□□□□ 0.6
APOEP02649 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.82■□□□□ 0.6
APOEP02649 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 AC016734.2-201ENST00000624325 1377 ntBASIC18.82■□□□□ 0.6
APOEP02649 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.82■□□□□ 0.6
APOEP02649 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.82■□□□□ 0.6
APOEP02649 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
APOEP02649 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.82■□□□□ 0.6
APOEP02649 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.82■□□□□ 0.6
APOEP02649 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.82■□□□□ 0.6
APOEP02649 AC090616.6-201ENST00000582640 721 ntBASIC18.82■□□□□ 0.6
APOEP02649 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.82■□□□□ 0.6
APOEP02649 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.82■□□□□ 0.6
APOEP02649 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.82■□□□□ 0.6
APOEP02649 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.82■□□□□ 0.6
APOEP02649 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
APOEP02649 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
APOEP02649 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.82■□□□□ 0.6
APOEP02649 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.81■□□□□ 0.6
APOEP02649 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.81■□□□□ 0.6
APOEP02649 AC135776.1-201ENST00000319817 2481 ntBASIC18.81■□□□□ 0.6
APOEP02649 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
APOEP02649 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.81■□□□□ 0.6
APOEP02649 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.81■□□□□ 0.6
APOEP02649 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.81■□□□□ 0.6
APOEP02649 TSPY12P-201ENST00000421279 868 ntBASIC18.81■□□□□ 0.6
APOEP02649 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.81■□□□□ 0.6
APOEP02649 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.81■□□□□ 0.6
APOEP02649 GUSBP12-201ENST00000513727 720 ntBASIC18.81■□□□□ 0.6
APOEP02649 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.81■□□□□ 0.6
APOEP02649 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.81■□□□□ 0.6
APOEP02649 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.81■□□□□ 0.6
APOEP02649 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.81■□□□□ 0.6
APOEP02649 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.81■□□□□ 0.6
APOEP02649 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.81■□□□□ 0.6
APOEP02649 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
APOEP02649 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.81■□□□□ 0.6
APOEP02649 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
APOEP02649 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
APOEP02649 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.81■□□□□ 0.6
APOEP02649 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
APOEP02649 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms