Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.39■□□□□ 0.37
LDLRP01130 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LDLRP01130 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.39■□□□□ 0.37
LDLRP01130 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.39■□□□□ 0.37
LDLRP01130 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.39■□□□□ 0.37
LDLRP01130 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.39■□□□□ 0.37
LDLRP01130 AL671277.2-201ENST00000458060 996 ntBASIC17.39■□□□□ 0.37
LDLRP01130 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.39■□□□□ 0.37
LDLRP01130 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.39■□□□□ 0.37
LDLRP01130 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.39■□□□□ 0.37
LDLRP01130 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.39■□□□□ 0.37
LDLRP01130 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.39■□□□□ 0.37
LDLRP01130 AC116407.4-201ENST00000623319 1061 ntBASIC17.39■□□□□ 0.37
LDLRP01130 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.39■□□□□ 0.37
LDLRP01130 AL031432.5-201ENST00000641059 760 ntBASIC17.39■□□□□ 0.37
LDLRP01130 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
LDLRP01130 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.39■□□□□ 0.37
LDLRP01130 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 AC005332.1-201ENST00000577698 1310 ntBASIC17.39■□□□□ 0.37
LDLRP01130 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.39■□□□□ 0.37
LDLRP01130 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LDLRP01130 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.39■□□□□ 0.37
LDLRP01130 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.38■□□□□ 0.37
LDLRP01130 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LDLRP01130 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.38■□□□□ 0.37
LDLRP01130 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.38■□□□□ 0.37
LDLRP01130 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 FLJ13224-201ENST00000313737 1514 ntBASIC17.38■□□□□ 0.37
LDLRP01130 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.38■□□□□ 0.37
LDLRP01130 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.38■□□□□ 0.37
LDLRP01130 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.38■□□□□ 0.37
LDLRP01130 AC007663.1-201ENST00000438948 1240 ntBASIC17.38■□□□□ 0.37
LDLRP01130 MFAP1P1-201ENST00000442257 1255 ntBASIC17.38■□□□□ 0.37
LDLRP01130 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.38■□□□□ 0.37
LDLRP01130 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.38■□□□□ 0.37
LDLRP01130 AL160286.2-201ENST00000567150 934 ntBASIC17.38■□□□□ 0.37
LDLRP01130 AC069148.1-201ENST00000608741 768 ntBASIC17.38■□□□□ 0.37
LDLRP01130 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.38■□□□□ 0.37
LDLRP01130 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 AC096733.2-201ENST00000609937 1394 ntBASIC17.38■□□□□ 0.37
LDLRP01130 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
LDLRP01130 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LDLRP01130 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.37■□□□□ 0.37
LDLRP01130 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.37■□□□□ 0.37
LDLRP01130 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.37■□□□□ 0.37
LDLRP01130 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.37■□□□□ 0.37
LDLRP01130 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.37■□□□□ 0.37
LDLRP01130 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
LDLRP01130 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 AC011298.2-201ENST00000617989 482 ntBASIC17.37■□□□□ 0.37
LDLRP01130 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.37■□□□□ 0.37
LDLRP01130 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
LDLRP01130 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms