Protein–RNA interactions for Protein: O60391

GRIN3B, Glutamate receptor ionotropic, NMDA 3B, humanhuman

Predictions only

Length 1,043 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GRIN3BO60391 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
GRIN3BO60391 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
GRIN3BO60391 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
GRIN3BO60391 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
GRIN3BO60391 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
GRIN3BO60391 AC107890.1-201ENST00000422478 521 ntBASIC21.77■■□□□ 1.08
GRIN3BO60391 AC103564.2-201ENST00000432853 1299 ntBASIC21.77■■□□□ 1.08
GRIN3BO60391 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.77■■□□□ 1.08
GRIN3BO60391 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
GRIN3BO60391 AIRN-201ENST00000601203 4374 ntBASIC21.77■■□□□ 1.08
GRIN3BO60391 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC21.77■■□□□ 1.08
GRIN3BO60391 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.77■■□□□ 1.08
GRIN3BO60391 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
GRIN3BO60391 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.77■■□□□ 1.08
GRIN3BO60391 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
GRIN3BO60391 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
GRIN3BO60391 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
GRIN3BO60391 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.76■■□□□ 1.07
GRIN3BO60391 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
GRIN3BO60391 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
GRIN3BO60391 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
GRIN3BO60391 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
GRIN3BO60391 TIMM8BP1-201ENST00000452384 211 ntBASIC21.76■■□□□ 1.07
GRIN3BO60391 AC069335.1-201ENST00000489972 472 ntBASIC21.76■■□□□ 1.07
GRIN3BO60391 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC21.76■■□□□ 1.07
GRIN3BO60391 AC112191.1-201ENST00000523689 701 ntBASIC21.76■■□□□ 1.07
GRIN3BO60391 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.76■■□□□ 1.07
GRIN3BO60391 OR7E47P-204ENST00000575924 449 ntBASIC21.76■■□□□ 1.07
GRIN3BO60391 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.76■■□□□ 1.07
GRIN3BO60391 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
GRIN3BO60391 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
GRIN3BO60391 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.76■■□□□ 1.07
GRIN3BO60391 FP475955.4-201ENST00000623131 1990 ntBASIC21.76■■□□□ 1.07
GRIN3BO60391 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
GRIN3BO60391 SDHAP2-201ENST00000455183 2001 ntBASIC21.75■■□□□ 1.07
GRIN3BO60391 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.75■■□□□ 1.07
GRIN3BO60391 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
GRIN3BO60391 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
GRIN3BO60391 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
GRIN3BO60391 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC21.75■■□□□ 1.07
GRIN3BO60391 COX5BP8-201ENST00000416911 349 ntBASIC21.75■■□□□ 1.07
GRIN3BO60391 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.75■■□□□ 1.07
GRIN3BO60391 AC005237.2-201ENST00000434368 219 ntBASIC21.75■■□□□ 1.07
GRIN3BO60391 NKTR-203ENST00000442970 646 ntTSL 2 BASIC21.75■■□□□ 1.07
GRIN3BO60391 AL512638.1-201ENST00000457493 794 ntBASIC21.75■■□□□ 1.07
GRIN3BO60391 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
GRIN3BO60391 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.75■■□□□ 1.07
GRIN3BO60391 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.75■■□□□ 1.07
GRIN3BO60391 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC21.75■■□□□ 1.07
GRIN3BO60391 SLC25A39P2-201ENST00000537614 270 ntBASIC21.75■■□□□ 1.07
GRIN3BO60391 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC21.75■■□□□ 1.07
GRIN3BO60391 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
GRIN3BO60391 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.75■■□□□ 1.07
GRIN3BO60391 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
GRIN3BO60391 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
GRIN3BO60391 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
GRIN3BO60391 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.74■■□□□ 1.07
GRIN3BO60391 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
GRIN3BO60391 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
GRIN3BO60391 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC21.74■■□□□ 1.07
GRIN3BO60391 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.74■■□□□ 1.07
GRIN3BO60391 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.74■■□□□ 1.07
GRIN3BO60391 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.74■■□□□ 1.07
GRIN3BO60391 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC21.74■■□□□ 1.07
GRIN3BO60391 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.74■■□□□ 1.07
GRIN3BO60391 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.74■■□□□ 1.07
GRIN3BO60391 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.74■■□□□ 1.07
GRIN3BO60391 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.74■■□□□ 1.07
GRIN3BO60391 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.74■■□□□ 1.07
GRIN3BO60391 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
GRIN3BO60391 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
GRIN3BO60391 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
GRIN3BO60391 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.74■■□□□ 1.07
GRIN3BO60391 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
GRIN3BO60391 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC21.74■■□□□ 1.07
GRIN3BO60391 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.73■■□□□ 1.07
GRIN3BO60391 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC21.73■■□□□ 1.07
GRIN3BO60391 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC21.73■■□□□ 1.07
GRIN3BO60391 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.73■■□□□ 1.07
GRIN3BO60391 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
GRIN3BO60391 AL662799.1-202ENST00000614205 422 ntBASIC21.73■■□□□ 1.07
GRIN3BO60391 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
GRIN3BO60391 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.73■■□□□ 1.07
GRIN3BO60391 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
GRIN3BO60391 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.73■■□□□ 1.07
GRIN3BO60391 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
GRIN3BO60391 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.72■■□□□ 1.07
GRIN3BO60391 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
GRIN3BO60391 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
GRIN3BO60391 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms