Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 AL512604.3-201ENST00000569583 964 ntBASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 MIR3917-201ENST00000580971 93 ntBASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV27A0A087WT01 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 AC020916.1-201ENST00000587762 1774 ntBASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 NEK4P2-201ENST00000580004 1012 ntBASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 AC092865.7-201ENST00000641832 219 ntBASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
TRAV27A0A087WT01 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 AL355312.1-201ENST00000407115 2176 ntBASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 AL645608.8-201ENST00000606034 2086 ntBASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 AL157888.1-201ENST00000631930 593 ntBASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV27A0A087WT01 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms