Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LRFN1Q9P244 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 AC073592.3-201ENST00000625118 1834 ntBASIC16.49■□□□□ 0.23
LRFN1Q9P244 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 AC018445.3-201ENST00000624177 1945 ntBASIC16.49■□□□□ 0.23
LRFN1Q9P244 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 AC009078.2-202ENST00000463353 338 ntBASIC16.49■□□□□ 0.23
LRFN1Q9P244 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LRFN1Q9P244 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LRFN1Q9P244 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 RCN1P2-201ENST00000398357 915 ntBASIC16.48■□□□□ 0.23
LRFN1Q9P244 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 AC112698.1-201ENST00000510299 916 ntBASIC16.48■□□□□ 0.23
LRFN1Q9P244 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 AP002469.2-201ENST00000531724 424 ntBASIC16.48■□□□□ 0.23
LRFN1Q9P244 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.48■□□□□ 0.23
LRFN1Q9P244 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LRFN1Q9P244 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 AC132008.2-207ENST00000454517 770 ntBASIC16.47■□□□□ 0.23
LRFN1Q9P244 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 AF238378.1-201ENST00000526806 358 ntBASIC16.47■□□□□ 0.23
LRFN1Q9P244 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 AL138831.2-201ENST00000606564 490 ntBASIC16.47■□□□□ 0.23
LRFN1Q9P244 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
LRFN1Q9P244 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
LRFN1Q9P244 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LRFN1Q9P244 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LRFN1Q9P244 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms