Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SHANK3Q9BYB0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SHANK3Q9BYB0 GOLGA6L17P-202ENST00000614358 1398 ntBASIC23.14■■□□□ 1.29
SHANK3Q9BYB0 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SHANK3Q9BYB0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC23.14■■□□□ 1.29
SHANK3Q9BYB0 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC23.14■■□□□ 1.29
SHANK3Q9BYB0 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 AL020989.1-201ENST00000422979 469 ntBASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 S100A2-206ENST00000497140 697 ntTSL 2 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 ORC5-208ENST00000626700 344 ntTSL 3 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 GID4-202ENST00000376345 1391 ntTSL 3 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 CNN2P11-201ENST00000429351 262 ntBASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 AC103564.2-201ENST00000432853 1299 ntBASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 AP000344.2-201ENST00000512987 629 ntBASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 IGHV3-65-201ENST00000523210 341 ntBASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
SHANK3Q9BYB0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SHANK3Q9BYB0 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 AL049757.1-201ENST00000616842 1596 ntBASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 COX20P2-201ENST00000452636 358 ntBASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 SPCS2P1-201ENST00000561636 679 ntBASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC23.11■■□□□ 1.29
SHANK3Q9BYB0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 TSEN15P1-201ENST00000423257 515 ntBASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 PON3-203ENST00000427422 894 ntTSL 3 BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 AC079781.4-201ENST00000641908 219 ntBASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SHANK3Q9BYB0 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SHANK3Q9BYB0 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SHANK3Q9BYB0 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC23.09■■□□□ 1.29
SHANK3Q9BYB0 CD82-202ENST00000342935 967 ntTSL 5 BASIC23.09■■□□□ 1.29
SHANK3Q9BYB0 MRPL20P1-201ENST00000400819 433 ntBASIC23.09■■□□□ 1.29
SHANK3Q9BYB0 AL031432.2-201ENST00000566714 459 ntBASIC23.09■■□□□ 1.29
SHANK3Q9BYB0 AL928711.1-201ENST00000570165 459 ntBASIC23.09■■□□□ 1.29
SHANK3Q9BYB0 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC23.09■■□□□ 1.29
SHANK3Q9BYB0 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms