Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 AL354751.1-201ENST00000412768 1863 ntBASIC17.85■□□□□ 0.45
VPS35Q96QK1 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 MIR3180-1-201ENST00000580374 94 ntBASIC17.85■□□□□ 0.45
VPS35Q96QK1 MIR3180-3-201ENST00000584616 94 ntBASIC17.85■□□□□ 0.45
VPS35Q96QK1 AP002414.4-201ENST00000589764 1148 ntBASIC17.85■□□□□ 0.45
VPS35Q96QK1 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.85■□□□□ 0.45
VPS35Q96QK1 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 AC093458.2-201ENST00000623150 629 ntBASIC17.85■□□□□ 0.45
VPS35Q96QK1 AC124864.1-201ENST00000623408 392 ntBASIC17.85■□□□□ 0.45
VPS35Q96QK1 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS35Q96QK1 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS35Q96QK1 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 REXO1L9P-201ENST00000604264 2108 ntBASIC17.84■□□□□ 0.45
VPS35Q96QK1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 KRT18P1-202ENST00000452408 1331 ntBASIC17.84■□□□□ 0.45
VPS35Q96QK1 AC022898.2-201ENST00000616822 1312 ntBASIC17.84■□□□□ 0.45
VPS35Q96QK1 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 AC246785.2-201ENST00000432512 513 ntBASIC17.84■□□□□ 0.45
VPS35Q96QK1 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 TPSP2-201ENST00000561760 610 ntBASIC17.84■□□□□ 0.45
VPS35Q96QK1 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS35Q96QK1 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VPS35Q96QK1 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VPS35Q96QK1 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.83■□□□□ 0.45
VPS35Q96QK1 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VPS35Q96QK1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VPS35Q96QK1 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS35Q96QK1 FLJ13224-201ENST00000313737 1514 ntBASIC17.83■□□□□ 0.45
VPS35Q96QK1 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.45
VPS35Q96QK1 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS35Q96QK1 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS35Q96QK1 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS35Q96QK1 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VPS35Q96QK1 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS35Q96QK1 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
VPS35Q96QK1 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
VPS35Q96QK1 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.83■□□□□ 0.44
VPS35Q96QK1 MTCL1P1-201ENST00000446207 792 ntBASIC17.83■□□□□ 0.44
VPS35Q96QK1 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms