Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 AC003101.2-201ENST00000612557 442 ntBASIC18.12■□□□□ 0.49
TTC28Q96AY4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 EP400NL-214ENST00000641289 2402 ntBASIC18.11■□□□□ 0.49
TTC28Q96AY4 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 AC119751.2-201ENST00000504529 210 ntBASIC18.11■□□□□ 0.49
TTC28Q96AY4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.11■□□□□ 0.49
TTC28Q96AY4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TTC28Q96AY4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.1■□□□□ 0.49
TTC28Q96AY4 AC132938.2-201ENST00000579188 680 ntBASIC18.1■□□□□ 0.49
TTC28Q96AY4 AL591163.1-201ENST00000641757 987 ntBASIC18.1■□□□□ 0.49
TTC28Q96AY4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TTC28Q96AY4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 SPDYE11-202ENST00000450699 704 ntBASIC18.09■□□□□ 0.49
TTC28Q96AY4 AC112698.1-201ENST00000510299 916 ntBASIC18.09■□□□□ 0.49
TTC28Q96AY4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 SPDYE9P-201ENST00000570642 692 ntBASIC18.09■□□□□ 0.49
TTC28Q96AY4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 SPDYE10P-202ENST00000612005 668 ntBASIC18.09■□□□□ 0.49
TTC28Q96AY4 SPDYE8P-202ENST00000612377 668 ntBASIC18.09■□□□□ 0.49
TTC28Q96AY4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 AC026310.3-201ENST00000625186 2373 ntBASIC18.09■□□□□ 0.49
TTC28Q96AY4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 FAM185BP-201ENST00000443595 716 ntBASIC18.09■□□□□ 0.49
TTC28Q96AY4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 RN7SL190P-201ENST00000582519 257 ntBASIC18.09■□□□□ 0.49
TTC28Q96AY4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TTC28Q96AY4 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
TTC28Q96AY4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms