Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 ANO7L1-203ENST00000602586 1720 ntBASIC18.01■□□□□ 0.47
HMGB4Q8WW32 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB4Q8WW32 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18■□□□□ 0.47
HMGB4Q8WW32 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
HMGB4Q8WW32 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB4Q8WW32 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB4Q8WW32 FAM220CP-201ENST00000395253 831 ntBASIC18■□□□□ 0.47
HMGB4Q8WW32 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18■□□□□ 0.47
HMGB4Q8WW32 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18■□□□□ 0.47
HMGB4Q8WW32 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18■□□□□ 0.47
HMGB4Q8WW32 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
HMGB4Q8WW32 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB4Q8WW32 RNA5SP415-201ENST00000517246 115 ntBASIC18■□□□□ 0.47
HMGB4Q8WW32 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18■□□□□ 0.47
HMGB4Q8WW32 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18■□□□□ 0.47
HMGB4Q8WW32 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
HMGB4Q8WW32 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB4Q8WW32 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB4Q8WW32 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB4Q8WW32 GMCL1P1-201ENST00000463439 1581 ntBASIC18■□□□□ 0.47
HMGB4Q8WW32 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 PGAM5P1-201ENST00000518923 814 ntBASIC17.99■□□□□ 0.47
HMGB4Q8WW32 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 AC034105.1-201ENST00000563488 319 ntBASIC17.99■□□□□ 0.47
HMGB4Q8WW32 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 Z83851.2-201ENST00000609564 659 ntBASIC17.99■□□□□ 0.47
HMGB4Q8WW32 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB4Q8WW32 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.98■□□□□ 0.47
HMGB4Q8WW32 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 AC092183.1-201ENST00000469884 875 ntBASIC17.98■□□□□ 0.47
HMGB4Q8WW32 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 FAM197Y3-203ENST00000618346 717 ntBASIC17.98■□□□□ 0.47
HMGB4Q8WW32 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB4Q8WW32 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB4Q8WW32 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms