Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 AC091607.1-201ENST00000490318 1060 ntBASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 LINC00304-203ENST00000565008 1864 ntBASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM3Q8TF72 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 MIR3180-1-201ENST00000580374 94 ntBASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 MIR3180-3-201ENST00000584616 94 ntBASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.32■□□□□ 0.52
SHROOM3Q8TF72 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 TSPY12P-201ENST00000421279 868 ntBASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 BX276092.5-203ENST00000456199 560 ntBASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 AL136038.3-201ENST00000561909 1096 ntBASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 AC006538.3-201ENST00000612495 578 ntBASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 AC124864.1-201ENST00000623408 392 ntBASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms