Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 KRT8P7-201ENST00000533003 1432 ntBASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 PCDHB18P-201ENST00000524813 2368 ntBASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 SLC25A6P5-201ENST00000435663 894 ntBASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SH3RF1Q7Z6J0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 AC099343.3-201ENST00000605834 2503 ntBASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 MIR149-201ENST00000384879 89 ntBASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 AC091607.1-201ENST00000490318 1060 ntBASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 POLD2P1-201ENST00000511220 997 ntBASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 AP005901.3-202ENST00000581653 237 ntBASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 AL096828.2-201ENST00000567259 1965 ntBASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SH3RF1Q7Z6J0 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 NUS1P2-201ENST00000417358 873 ntBASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 KRT18P23-201ENST00000435622 1283 ntBASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 AC010240.3-201ENST00000607688 395 ntBASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 AL773604.1-201ENST00000617417 272 ntBASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 AC148477.8-201ENST00000624298 468 ntBASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.58■□□□□ 0.89
SH3RF1Q7Z6J0 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SH3RF1Q7Z6J0 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.58■□□□□ 0.88
SH3RF1Q7Z6J0 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SH3RF1Q7Z6J0 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SH3RF1Q7Z6J0 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SH3RF1Q7Z6J0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.58■□□□□ 0.88
SH3RF1Q7Z6J0 NSUN5P1-202ENST00000421140 1535 ntBASIC20.58■□□□□ 0.88
SH3RF1Q7Z6J0 NSUN5P2-203ENST00000457352 1529 ntBASIC20.58■□□□□ 0.88
SH3RF1Q7Z6J0 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms