Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RFX4Q33E94 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RFX4Q33E94 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RFX4Q33E94 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
RFX4Q33E94 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
RFX4Q33E94 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
RFX4Q33E94 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
RFX4Q33E94 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
RFX4Q33E94 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
RFX4Q33E94 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
RFX4Q33E94 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RFX4Q33E94 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
RFX4Q33E94 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
RFX4Q33E94 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
RFX4Q33E94 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.76■□□□□ 0.27
RFX4Q33E94 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
RFX4Q33E94 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 AC133963.1-201ENST00000504166 1679 ntBASIC16.76■□□□□ 0.27
RFX4Q33E94 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.76■□□□□ 0.27
RFX4Q33E94 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.76■□□□□ 0.27
RFX4Q33E94 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.76■□□□□ 0.27
RFX4Q33E94 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.76■□□□□ 0.27
RFX4Q33E94 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.76■□□□□ 0.27
RFX4Q33E94 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC16.76■□□□□ 0.27
RFX4Q33E94 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
RFX4Q33E94 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFX4Q33E94 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
RFX4Q33E94 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 FSCN1P1-201ENST00000568912 1481 ntBASIC16.75■□□□□ 0.27
RFX4Q33E94 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
RFX4Q33E94 MIR564-202ENST00000385049 94 ntBASIC16.75■□□□□ 0.27
RFX4Q33E94 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.75■□□□□ 0.27
RFX4Q33E94 CD99P1-205ENST00000527459 561 ntBASIC16.75■□□□□ 0.27
RFX4Q33E94 RNF121-214ENST00000533380 870 ntTSL 3 BASIC16.75■□□□□ 0.27
RFX4Q33E94 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.75■□□□□ 0.27
RFX4Q33E94 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC16.75■□□□□ 0.27
RFX4Q33E94 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.75■□□□□ 0.27
RFX4Q33E94 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.75■□□□□ 0.27
RFX4Q33E94 AP000692.2-201ENST00000608391 879 ntBASIC16.75■□□□□ 0.27
RFX4Q33E94 MMD2-204ENST00000612910 778 ntTSL 5 BASIC16.75■□□□□ 0.27
RFX4Q33E94 AC008622.2-201ENST00000617006 1229 ntBASIC16.75■□□□□ 0.27
RFX4Q33E94 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
RFX4Q33E94 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX4Q33E94 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.74■□□□□ 0.27
RFX4Q33E94 AC034236.2-201ENST00000606662 1610 ntBASIC16.74■□□□□ 0.27
RFX4Q33E94 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.74■□□□□ 0.27
RFX4Q33E94 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
RFX4Q33E94 AL355312.1-201ENST00000407115 2176 ntBASIC16.74■□□□□ 0.27
RFX4Q33E94 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.74■□□□□ 0.27
RFX4Q33E94 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 KRT8P50-201ENST00000562022 1438 ntBASIC16.74■□□□□ 0.27
RFX4Q33E94 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
RFX4Q33E94 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
RFX4Q33E94 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.74■□□□□ 0.27
RFX4Q33E94 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC16.74■□□□□ 0.27
RFX4Q33E94 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RFX4Q33E94 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.74■□□□□ 0.27
RFX4Q33E94 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.74■□□□□ 0.27
RFX4Q33E94 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX4Q33E94 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms