Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 AC005332.8-201ENST00000622750 2735 ntBASIC17.28■□□□□ 0.36
COL28A1Q2UY09 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 IGHGP-201ENST00000390555 1178 ntBASIC17.28■□□□□ 0.36
COL28A1Q2UY09 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 AC211486.1-202ENST00000416371 468 ntBASIC17.28■□□□□ 0.36
COL28A1Q2UY09 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 AC211476.1-201ENST00000503899 468 ntBASIC17.28■□□□□ 0.36
COL28A1Q2UY09 AC096582.2-201ENST00000510860 516 ntBASIC17.28■□□□□ 0.36
COL28A1Q2UY09 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL28A1Q2UY09 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 COX20P2-201ENST00000452636 358 ntBASIC17.27■□□□□ 0.36
COL28A1Q2UY09 FGFR3P6-201ENST00000457012 610 ntBASIC17.27■□□□□ 0.36
COL28A1Q2UY09 HLA-J-202ENST00000469281 1241 ntBASIC17.27■□□□□ 0.36
COL28A1Q2UY09 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.27■□□□□ 0.36
COL28A1Q2UY09 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms