Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
FOXA3P55318 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
FOXA3P55318 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
FOXA3P55318 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 AC068418.2-201ENST00000577309 3703 ntBASIC13.54□□□□□ -0.24
FOXA3P55318 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
FOXA3P55318 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
FOXA3P55318 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
FOXA3P55318 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
FOXA3P55318 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC13.54□□□□□ -0.24
FOXA3P55318 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC13.54□□□□□ -0.24
FOXA3P55318 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC13.54□□□□□ -0.24
FOXA3P55318 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC13.54□□□□□ -0.24
FOXA3P55318 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC13.54□□□□□ -0.24
FOXA3P55318 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC13.54□□□□□ -0.24
FOXA3P55318 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
FOXA3P55318 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC13.54□□□□□ -0.24
FOXA3P55318 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA3P55318 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC13.54□□□□□ -0.24
FOXA3P55318 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
FOXA3P55318 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 KRT8P11-201ENST00000409686 1436 ntBASIC13.54□□□□□ -0.24
FOXA3P55318 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
FOXA3P55318 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA3P55318 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
FOXA3P55318 ME3-201ENST00000323418 1068 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 AC004911.1-201ENST00000416316 871 ntBASIC13.53□□□□□ -0.24
FOXA3P55318 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC13.53□□□□□ -0.24
FOXA3P55318 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 AC105036.2-201ENST00000569468 176 ntBASIC13.53□□□□□ -0.24
FOXA3P55318 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA3P55318 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
FOXA3P55318 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 HYMAI-201ENST00000635591 3347 ntBASIC13.53□□□□□ -0.24
FOXA3P55318 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
FOXA3P55318 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 RCC2P3-201ENST00000418112 1537 ntBASIC13.53□□□□□ -0.24
FOXA3P55318 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.53□□□□□ -0.24
FOXA3P55318 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA3P55318 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms